Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2166 and Dshi_2167 are separated by 13 nucleotides Dshi_2167 and Dshi_2168 overlap by 17 nucleotides Dshi_2168 and Dshi_2169 overlap by 4 nucleotides Dshi_2169 and Dshi_2170 are separated by 5 nucleotides Dshi_2170 and Dshi_2171 are separated by 21 nucleotides
Dshi_2166: Dshi_2166 - hypothetical protein (RefSeq), at 2,297,631 to 2,298,263
_2166
Dshi_2167: Dshi_2167 - phage-related minor tail protein-like protein (RefSeq), at 2,298,277 to 2,298,945
_2167
Dshi_2168: Dshi_2168 - hypothetical protein (RefSeq), at 2,298,929 to 2,299,144
_2168
Dshi_2169: Dshi_2169 - hypothetical protein (RefSeq), at 2,299,141 to 2,299,470
_2169
Dshi_2170: Dshi_2170 - phage major tail protein, TP901-1 family (RefSeq), at 2,299,476 to 2,299,889
_2170
Dshi_2171: Dshi_2171 - hypothetical protein (RefSeq), at 2,299,911 to 2,300,321
_2171
Position (kb)
2298
2299
2300 Strain fitness (log2 ratio)
-2
-1
0
1 at 2298.045 kb on + strand, within Dshi_2166 at 2298.083 kb on + strand, within Dshi_2166 at 2298.127 kb on - strand, within Dshi_2166 at 2298.137 kb on + strand, within Dshi_2166 at 2298.149 kb on - strand, within Dshi_2166 at 2298.159 kb on - strand, within Dshi_2166 at 2298.169 kb on - strand, within Dshi_2166 at 2298.310 kb on + strand at 2298.441 kb on - strand, within Dshi_2167 at 2298.473 kb on - strand, within Dshi_2167 at 2298.575 kb on - strand, within Dshi_2167 at 2298.580 kb on + strand, within Dshi_2167 at 2298.627 kb on + strand, within Dshi_2167 at 2298.673 kb on + strand, within Dshi_2167 at 2298.681 kb on - strand, within Dshi_2167 at 2298.707 kb on + strand, within Dshi_2167 at 2298.807 kb on + strand, within Dshi_2167 at 2298.820 kb on - strand, within Dshi_2167 at 2298.820 kb on - strand, within Dshi_2167 at 2298.871 kb on - strand, within Dshi_2167 at 2298.920 kb on - strand at 2299.059 kb on - strand, within Dshi_2168 at 2299.090 kb on + strand, within Dshi_2168 at 2299.090 kb on + strand, within Dshi_2168 at 2299.105 kb on + strand, within Dshi_2168 at 2299.157 kb on + strand at 2299.221 kb on - strand, within Dshi_2169 at 2299.262 kb on + strand, within Dshi_2169 at 2299.270 kb on - strand, within Dshi_2169 at 2299.305 kb on - strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.318 kb on + strand, within Dshi_2169 at 2299.326 kb on - strand, within Dshi_2169 at 2299.336 kb on - strand, within Dshi_2169 at 2299.384 kb on - strand, within Dshi_2169 at 2299.395 kb on + strand, within Dshi_2169 at 2299.415 kb on + strand, within Dshi_2169 at 2299.415 kb on + strand, within Dshi_2169 at 2299.420 kb on + strand, within Dshi_2169 at 2299.423 kb on - strand, within Dshi_2169 at 2299.428 kb on - strand, within Dshi_2169 at 2299.444 kb on + strand at 2299.448 kb on - strand at 2299.462 kb on - strand at 2299.502 kb on - strand at 2299.698 kb on + strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.716 kb on - strand, within Dshi_2170 at 2299.733 kb on - strand, within Dshi_2170 at 2299.733 kb on - strand, within Dshi_2170 at 2299.762 kb on - strand, within Dshi_2170 at 2299.771 kb on - strand, within Dshi_2170 at 2299.847 kb on + strand, within Dshi_2170 at 2299.885 kb on + strand at 2299.886 kb on + strand at 2299.893 kb on - strand at 2299.893 kb on - strand at 2299.904 kb on - strand at 2300.005 kb on - strand, within Dshi_2171 at 2300.035 kb on - strand, within Dshi_2171 at 2300.114 kb on - strand, within Dshi_2171
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,298,045 + Dshi_2166 0.65 -0.0 2,298,083 + Dshi_2166 0.71 +0.2 2,298,127 - Dshi_2166 0.78 +0.5 2,298,137 + Dshi_2166 0.80 -0.8 2,298,149 - Dshi_2166 0.82 -0.0 2,298,159 - Dshi_2166 0.83 +0.1 2,298,169 - Dshi_2166 0.85 -0.7 2,298,310 + -1.5 2,298,441 - Dshi_2167 0.25 +0.4 2,298,473 - Dshi_2167 0.29 +0.3 2,298,575 - Dshi_2167 0.45 +0.7 2,298,580 + Dshi_2167 0.45 +0.6 2,298,627 + Dshi_2167 0.52 -1.8 2,298,673 + Dshi_2167 0.59 -0.0 2,298,681 - Dshi_2167 0.60 +0.5 2,298,707 + Dshi_2167 0.64 -0.1 2,298,807 + Dshi_2167 0.79 -0.2 2,298,820 - Dshi_2167 0.81 -0.2 2,298,820 - Dshi_2167 0.81 +0.0 2,298,871 - Dshi_2167 0.89 -0.3 2,298,920 - -0.3 2,299,059 - Dshi_2168 0.60 +0.5 2,299,090 + Dshi_2168 0.75 -0.6 2,299,090 + Dshi_2168 0.75 +1.2 2,299,105 + Dshi_2168 0.81 +0.2 2,299,157 + +0.7 2,299,221 - Dshi_2169 0.24 -1.5 2,299,262 + Dshi_2169 0.37 -0.6 2,299,270 - Dshi_2169 0.39 -0.0 2,299,305 - Dshi_2169 0.50 +0.8 2,299,318 + Dshi_2169 0.54 -0.1 2,299,318 + Dshi_2169 0.54 -0.4 2,299,318 + Dshi_2169 0.54 +0.1 2,299,326 - Dshi_2169 0.56 -0.5 2,299,336 - Dshi_2169 0.59 +0.1 2,299,384 - Dshi_2169 0.74 +0.2 2,299,395 + Dshi_2169 0.77 -1.1 2,299,415 + Dshi_2169 0.83 +0.4 2,299,415 + Dshi_2169 0.83 +0.1 2,299,420 + Dshi_2169 0.85 +0.1 2,299,423 - Dshi_2169 0.85 +0.8 2,299,428 - Dshi_2169 0.87 +1.7 2,299,444 + +0.1 2,299,448 - +0.4 2,299,462 - -0.5 2,299,502 - +0.5 2,299,698 + Dshi_2170 0.54 +1.1 2,299,716 - Dshi_2170 0.58 -0.4 2,299,716 - Dshi_2170 0.58 +0.2 2,299,716 - Dshi_2170 0.58 +0.5 2,299,733 - Dshi_2170 0.62 +0.6 2,299,733 - Dshi_2170 0.62 +0.1 2,299,762 - Dshi_2170 0.69 +0.5 2,299,771 - Dshi_2170 0.71 -0.1 2,299,847 + Dshi_2170 0.90 -0.0 2,299,885 + +0.1 2,299,886 + +0.4 2,299,893 - +1.1 2,299,893 - +0.0 2,299,904 - -0.1 2,300,005 - Dshi_2171 0.23 -0.4 2,300,035 - Dshi_2171 0.30 -0.1 2,300,114 - Dshi_2171 0.49 -0.7
Or see this region's nucleotide sequence