Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1808 and Dshi_1809 are separated by 159 nucleotides Dshi_1809 and Dshi_1810 are separated by 101 nucleotides
Dshi_1808: Dshi_1808 - amino acid carrier protein (RefSeq), at 1,881,663 to 1,883,201
_1808
Dshi_1809: Dshi_1809 - excinuclease ABC, A subunit (RefSeq), at 1,883,361 to 1,886,222
_1809
Dshi_1810: Dshi_1810 - major facilitator superfamily MFS_1 (RefSeq), at 1,886,324 to 1,887,496
_1810
Position (kb)
1883
1884
1885
1886
1887 Strain fitness (log2 ratio)
-1
0
1 at 1882.434 kb on + strand, within Dshi_1808 at 1882.654 kb on + strand, within Dshi_1808 at 1882.678 kb on + strand, within Dshi_1808 at 1882.747 kb on + strand, within Dshi_1808 at 1882.755 kb on - strand, within Dshi_1808 at 1882.870 kb on + strand, within Dshi_1808 at 1883.014 kb on + strand, within Dshi_1808 at 1883.163 kb on + strand at 1883.304 kb on - strand at 1883.383 kb on + strand at 1883.406 kb on - strand at 1883.521 kb on + strand at 1883.565 kb on + strand at 1883.646 kb on + strand at 1883.844 kb on - strand, within Dshi_1809 at 1883.887 kb on - strand, within Dshi_1809 at 1883.916 kb on + strand, within Dshi_1809 at 1884.037 kb on - strand, within Dshi_1809 at 1884.188 kb on - strand, within Dshi_1809 at 1884.217 kb on - strand, within Dshi_1809 at 1884.246 kb on - strand, within Dshi_1809 at 1884.334 kb on - strand, within Dshi_1809 at 1884.393 kb on - strand, within Dshi_1809 at 1884.481 kb on + strand, within Dshi_1809 at 1884.594 kb on - strand, within Dshi_1809 at 1884.681 kb on - strand, within Dshi_1809 at 1884.828 kb on - strand, within Dshi_1809 at 1884.877 kb on + strand, within Dshi_1809 at 1885.105 kb on + strand, within Dshi_1809 at 1885.189 kb on + strand, within Dshi_1809 at 1885.195 kb on + strand, within Dshi_1809 at 1885.336 kb on - strand, within Dshi_1809 at 1885.383 kb on + strand, within Dshi_1809 at 1885.410 kb on - strand, within Dshi_1809 at 1885.535 kb on + strand, within Dshi_1809 at 1885.801 kb on - strand, within Dshi_1809 at 1885.862 kb on - strand, within Dshi_1809 at 1885.987 kb on - strand at 1886.252 kb on + strand at 1886.265 kb on - strand at 1886.314 kb on + strand at 1886.586 kb on + strand, within Dshi_1810 at 1886.698 kb on + strand, within Dshi_1810 at 1886.706 kb on - strand, within Dshi_1810 at 1886.911 kb on + strand, within Dshi_1810 at 1886.993 kb on - strand, within Dshi_1810 at 1887.056 kb on - strand, within Dshi_1810 at 1887.108 kb on + strand, within Dshi_1810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,882,434 + Dshi_1808 0.50 -0.5 1,882,654 + Dshi_1808 0.64 -0.5 1,882,678 + Dshi_1808 0.66 -0.3 1,882,747 + Dshi_1808 0.70 -1.1 1,882,755 - Dshi_1808 0.71 -0.1 1,882,870 + Dshi_1808 0.78 -0.1 1,883,014 + Dshi_1808 0.88 -1.1 1,883,163 + +0.1 1,883,304 - -0.1 1,883,383 + -0.4 1,883,406 - -0.6 1,883,521 + +0.1 1,883,565 + -0.5 1,883,646 + -0.5 1,883,844 - Dshi_1809 0.17 +0.4 1,883,887 - Dshi_1809 0.18 +0.2 1,883,916 + Dshi_1809 0.19 -0.4 1,884,037 - Dshi_1809 0.24 -0.5 1,884,188 - Dshi_1809 0.29 -1.3 1,884,217 - Dshi_1809 0.30 -0.2 1,884,246 - Dshi_1809 0.31 -0.9 1,884,334 - Dshi_1809 0.34 -0.6 1,884,393 - Dshi_1809 0.36 -0.4 1,884,481 + Dshi_1809 0.39 +0.2 1,884,594 - Dshi_1809 0.43 -1.7 1,884,681 - Dshi_1809 0.46 -0.1 1,884,828 - Dshi_1809 0.51 -1.7 1,884,877 + Dshi_1809 0.53 -1.2 1,885,105 + Dshi_1809 0.61 -0.9 1,885,189 + Dshi_1809 0.64 -0.5 1,885,195 + Dshi_1809 0.64 -1.1 1,885,336 - Dshi_1809 0.69 -0.2 1,885,383 + Dshi_1809 0.71 -0.3 1,885,410 - Dshi_1809 0.72 -0.5 1,885,535 + Dshi_1809 0.76 -1.4 1,885,801 - Dshi_1809 0.85 -0.6 1,885,862 - Dshi_1809 0.87 -1.3 1,885,987 - -0.3 1,886,252 + -0.5 1,886,265 - -0.9 1,886,314 + -0.4 1,886,586 + Dshi_1810 0.22 +0.3 1,886,698 + Dshi_1810 0.32 -1.3 1,886,706 - Dshi_1810 0.33 -1.3 1,886,911 + Dshi_1810 0.50 -0.8 1,886,993 - Dshi_1810 0.57 -0.3 1,887,056 - Dshi_1810 0.62 -0.0 1,887,108 + Dshi_1810 0.67 +0.5
Or see this region's nucleotide sequence