Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1671 and Dshi_1672 are separated by 43 nucleotides Dshi_1672 and Dshi_1673 overlap by 29 nucleotides Dshi_1673 and Dshi_1674 are separated by 252 nucleotides Dshi_1674 and Dshi_1675 are separated by 26 nucleotides
Dshi_1671: Dshi_1671 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,739,910 to 1,741,304
_1671
Dshi_1672: Dshi_1672 - ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq), at 1,741,348 to 1,742,121
_1672
Dshi_1673: Dshi_1673 - Ppx/GppA phosphatase (RefSeq), at 1,742,093 to 1,743,274
_1673
Dshi_1674: Dshi_1674 - hypothetical protein (RefSeq), at 1,743,527 to 1,743,829
_1674
Dshi_1675: Dshi_1675 - MetF protein-like protein (RefSeq), at 1,743,856 to 1,744,782
_1675
Position (kb)
1742
1743
1744 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1741.101 kb on + strand, within Dshi_1671 at 1741.109 kb on - strand, within Dshi_1671 at 1741.241 kb on - strand at 1741.241 kb on - strand at 1741.283 kb on - strand at 1742.144 kb on - strand at 1742.304 kb on + strand, within Dshi_1673 at 1742.326 kb on + strand, within Dshi_1673 at 1742.377 kb on + strand, within Dshi_1673 at 1742.421 kb on + strand, within Dshi_1673 at 1742.782 kb on - strand, within Dshi_1673 at 1742.925 kb on + strand, within Dshi_1673 at 1743.009 kb on - strand, within Dshi_1673 at 1743.063 kb on + strand, within Dshi_1673 at 1743.063 kb on + strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.125 kb on - strand, within Dshi_1673 at 1743.141 kb on - strand, within Dshi_1673 at 1743.175 kb on - strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.264 kb on + strand at 1743.419 kb on + strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.456 kb on - strand at 1743.507 kb on + strand at 1743.759 kb on - strand, within Dshi_1674 at 1743.776 kb on + strand, within Dshi_1674 at 1743.826 kb on - strand at 1743.857 kb on - strand at 1743.858 kb on - strand at 1743.889 kb on + strand at 1743.908 kb on + strand at 1743.985 kb on - strand, within Dshi_1675 at 1743.998 kb on - strand, within Dshi_1675 at 1744.087 kb on - strand, within Dshi_1675 at 1744.124 kb on + strand, within Dshi_1675 at 1744.217 kb on - strand, within Dshi_1675
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,741,101 + Dshi_1671 0.85 -0.7 1,741,109 - Dshi_1671 0.86 -0.6 1,741,241 - -0.6 1,741,241 - +0.0 1,741,283 - -0.2 1,742,144 - -2.1 1,742,304 + Dshi_1673 0.18 -1.6 1,742,326 + Dshi_1673 0.20 -1.9 1,742,377 + Dshi_1673 0.24 -1.2 1,742,421 + Dshi_1673 0.28 -0.7 1,742,782 - Dshi_1673 0.58 -1.0 1,742,925 + Dshi_1673 0.70 -1.4 1,743,009 - Dshi_1673 0.77 -2.6 1,743,063 + Dshi_1673 0.82 -2.4 1,743,063 + Dshi_1673 0.82 -1.6 1,743,071 - Dshi_1673 0.83 -0.4 1,743,071 - Dshi_1673 0.83 -2.7 1,743,071 - Dshi_1673 0.83 -2.8 1,743,071 - Dshi_1673 0.83 -1.3 1,743,125 - Dshi_1673 0.87 +0.3 1,743,141 - Dshi_1673 0.89 -2.0 1,743,175 - -2.2 1,743,238 + -0.4 1,743,238 + -1.4 1,743,238 + -2.7 1,743,238 + -1.1 1,743,238 + -2.7 1,743,238 + -2.0 1,743,238 + -0.4 1,743,246 - -1.0 1,743,246 - -2.3 1,743,246 - -3.0 1,743,246 - -1.9 1,743,246 - +0.6 1,743,264 + -2.1 1,743,419 + +0.4 1,743,427 - +0.1 1,743,427 - -0.2 1,743,456 - +0.0 1,743,507 + -0.2 1,743,759 - Dshi_1674 0.77 +0.6 1,743,776 + Dshi_1674 0.82 +1.0 1,743,826 - +0.9 1,743,857 - +0.0 1,743,858 - -0.4 1,743,889 + -0.9 1,743,908 + -0.5 1,743,985 - Dshi_1675 0.14 -0.1 1,743,998 - Dshi_1675 0.15 +0.8 1,744,087 - Dshi_1675 0.25 +0.6 1,744,124 + Dshi_1675 0.29 -0.6 1,744,217 - Dshi_1675 0.39 +0.1
Or see this region's nucleotide sequence