Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1201 and Dshi_R0025 are separated by 51 nucleotides Dshi_R0025 and Dshi_1202 are separated by 18 nucleotides Dshi_1202 and Dshi_1203 are separated by 72 nucleotides Dshi_1203 and Dshi_1204 are separated by 9 nucleotides Dshi_1204 and Dshi_1205 are separated by 342 nucleotides
Dshi_1201: Dshi_1201 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,241,780 to 1,242,331
_1201
Dshi_R0025: Dshi_R0025 - tRNA-Leu (RefSeq), at 1,242,383 to 1,242,468
_R0025
Dshi_1202: Dshi_1202 - heat shock protein DnaJ domain protein (RefSeq), at 1,242,487 to 1,243,116
_1202
Dshi_1203: Dshi_1203 - BolA family protein (RefSeq), at 1,243,189 to 1,243,446
_1203
Dshi_1204: Dshi_1204 - hypothetical protein (RefSeq), at 1,243,456 to 1,243,872
_1204
Dshi_1205: Dshi_1205 - hypothetical protein (RefSeq), at 1,244,215 to 1,244,763
_1205
Position (kb)
1243
1244 Strain fitness (log2 ratio)
-2
-1
0
1 at 1242.214 kb on - strand, within Dshi_1201 at 1242.481 kb on - strand at 1242.935 kb on - strand, within Dshi_1202 at 1242.982 kb on - strand, within Dshi_1202 at 1243.008 kb on + strand, within Dshi_1202 at 1243.008 kb on + strand, within Dshi_1202 at 1243.034 kb on + strand, within Dshi_1202 at 1243.126 kb on + strand at 1243.147 kb on + strand at 1243.155 kb on - strand at 1243.155 kb on - strand at 1243.155 kb on - strand at 1243.166 kb on - strand at 1243.224 kb on - strand, within Dshi_1203 at 1243.230 kb on - strand, within Dshi_1203 at 1243.440 kb on + strand at 1243.602 kb on - strand, within Dshi_1204 at 1243.673 kb on + strand, within Dshi_1204 at 1243.681 kb on - strand, within Dshi_1204 at 1243.704 kb on - strand, within Dshi_1204 at 1243.728 kb on - strand, within Dshi_1204 at 1243.829 kb on - strand, within Dshi_1204 at 1243.924 kb on - strand at 1243.941 kb on - strand at 1244.142 kb on - strand at 1244.171 kb on - strand at 1244.173 kb on + strand at 1244.178 kb on + strand at 1244.178 kb on + strand at 1244.186 kb on - strand at 1244.292 kb on - strand, within Dshi_1205 at 1244.292 kb on - strand, within Dshi_1205 at 1244.292 kb on - strand, within Dshi_1205 at 1244.441 kb on - strand, within Dshi_1205
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,242,214 - Dshi_1201 0.79 +1.3 1,242,481 - +0.1 1,242,935 - Dshi_1202 0.71 -0.9 1,242,982 - Dshi_1202 0.79 -2.0 1,243,008 + Dshi_1202 0.83 -1.0 1,243,008 + Dshi_1202 0.83 -1.6 1,243,034 + Dshi_1202 0.87 -1.9 1,243,126 + +0.7 1,243,147 + +0.1 1,243,155 - -0.4 1,243,155 - -0.5 1,243,155 - -0.2 1,243,166 - -1.9 1,243,224 - Dshi_1203 0.14 -0.8 1,243,230 - Dshi_1203 0.16 -0.4 1,243,440 + +0.5 1,243,602 - Dshi_1204 0.35 -1.0 1,243,673 + Dshi_1204 0.52 +0.3 1,243,681 - Dshi_1204 0.54 -0.2 1,243,704 - Dshi_1204 0.59 -0.1 1,243,728 - Dshi_1204 0.65 -0.4 1,243,829 - Dshi_1204 0.89 +0.0 1,243,924 - +0.0 1,243,941 - +0.3 1,244,142 - -0.1 1,244,171 - +0.0 1,244,173 + -0.7 1,244,178 + +0.7 1,244,178 + +0.0 1,244,186 - +0.7 1,244,292 - Dshi_1205 0.14 +0.1 1,244,292 - Dshi_1205 0.14 +0.9 1,244,292 - Dshi_1205 0.14 +0.7 1,244,441 - Dshi_1205 0.41 -0.3
Or see this region's nucleotide sequence