Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0477

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0476 and Dshi_0477 are separated by 84 nucleotidesDshi_0477 and Dshi_0478 overlap by 17 nucleotidesDshi_0478 and Dshi_0479 overlap by 4 nucleotides Dshi_0476: Dshi_0476 - Pyrrolo-quinoline quinone (RefSeq), at 460,857 to 462,659 _0476 Dshi_0477: Dshi_0477 - hypothetical protein (RefSeq), at 462,744 to 463,289 _0477 Dshi_0478: Dshi_0478 - extracellular solute-binding protein family 3 (RefSeq), at 463,273 to 464,121 _0478 Dshi_0479: Dshi_0479 - hypothetical protein (RefSeq), at 464,118 to 464,666 _0479 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1 2 3at 461.745 kb on - strand, within Dshi_0476at 461.793 kb on - strand, within Dshi_0476at 461.808 kb on + strand, within Dshi_0476at 461.816 kb on - strand, within Dshi_0476at 461.818 kb on + strand, within Dshi_0476at 461.879 kb on - strand, within Dshi_0476at 461.907 kb on + strand, within Dshi_0476at 461.907 kb on + strand, within Dshi_0476at 461.908 kb on - strand, within Dshi_0476at 461.908 kb on - strand, within Dshi_0476at 461.915 kb on - strand, within Dshi_0476at 461.915 kb on - strand, within Dshi_0476at 461.915 kb on - strand, within Dshi_0476at 461.923 kb on - strand, within Dshi_0476at 461.958 kb on + strand, within Dshi_0476at 461.966 kb on - strand, within Dshi_0476at 461.983 kb on + strand, within Dshi_0476at 461.987 kb on - strand, within Dshi_0476at 462.032 kb on + strand, within Dshi_0476at 462.042 kb on + strand, within Dshi_0476at 462.060 kb on - strand, within Dshi_0476at 462.067 kb on - strand, within Dshi_0476at 462.067 kb on - strand, within Dshi_0476at 462.074 kb on + strand, within Dshi_0476at 462.077 kb on - strand, within Dshi_0476at 462.140 kb on - strand, within Dshi_0476at 462.181 kb on - strand, within Dshi_0476at 462.199 kb on + strand, within Dshi_0476at 462.204 kb on + strand, within Dshi_0476at 462.212 kb on - strand, within Dshi_0476at 462.212 kb on - strand, within Dshi_0476at 462.222 kb on - strand, within Dshi_0476at 462.228 kb on - strand, within Dshi_0476at 462.360 kb on + strand, within Dshi_0476at 462.371 kb on + strand, within Dshi_0476at 462.377 kb on - strand, within Dshi_0476at 462.403 kb on - strand, within Dshi_0476at 462.428 kb on - strand, within Dshi_0476at 462.434 kb on - strand, within Dshi_0476at 462.509 kb on + strandat 462.535 kb on + strandat 462.547 kb on + strandat 462.592 kb on + strandat 462.603 kb on - strandat 462.603 kb on - strandat 462.603 kb on - strandat 462.608 kb on - strandat 462.613 kb on + strandat 462.621 kb on - strandat 462.621 kb on - strandat 462.639 kb on - strandat 462.715 kb on + strandat 462.742 kb on + strandat 462.757 kb on + strandat 462.765 kb on - strandat 462.800 kb on + strand, within Dshi_0477at 462.857 kb on + strand, within Dshi_0477at 462.860 kb on - strand, within Dshi_0477at 462.891 kb on - strand, within Dshi_0477at 462.891 kb on - strand, within Dshi_0477at 462.911 kb on + strand, within Dshi_0477at 462.914 kb on + strand, within Dshi_0477at 462.924 kb on + strand, within Dshi_0477at 462.932 kb on - strand, within Dshi_0477at 462.932 kb on - strand, within Dshi_0477at 462.973 kb on - strand, within Dshi_0477at 462.973 kb on - strand, within Dshi_0477at 462.985 kb on + strand, within Dshi_0477at 462.993 kb on - strand, within Dshi_0477at 462.995 kb on + strand, within Dshi_0477at 463.004 kb on - strand, within Dshi_0477at 463.014 kb on - strand, within Dshi_0477at 463.021 kb on + strand, within Dshi_0477at 463.027 kb on + strand, within Dshi_0477at 463.028 kb on + strand, within Dshi_0477at 463.034 kb on - strand, within Dshi_0477at 463.041 kb on - strand, within Dshi_0477at 463.060 kb on - strand, within Dshi_0477at 463.073 kb on - strand, within Dshi_0477at 463.100 kb on - strand, within Dshi_0477at 463.173 kb on - strand, within Dshi_0477at 463.194 kb on - strand, within Dshi_0477at 463.207 kb on + strand, within Dshi_0477at 463.210 kb on + strand, within Dshi_0477at 463.259 kb on - strandat 463.287 kb on - strandat 463.301 kb on + strandat 463.321 kb on - strandat 463.354 kb on + strandat 463.361 kb on + strand, within Dshi_0478at 463.361 kb on + strand, within Dshi_0478at 463.369 kb on - strand, within Dshi_0478at 463.369 kb on - strand, within Dshi_0478at 463.391 kb on - strand, within Dshi_0478at 463.392 kb on + strand, within Dshi_0478at 463.395 kb on - strand, within Dshi_0478at 463.395 kb on - strand, within Dshi_0478at 463.400 kb on - strand, within Dshi_0478at 463.421 kb on + strand, within Dshi_0478at 463.462 kb on - strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.502 kb on + strand, within Dshi_0478at 463.508 kb on + strand, within Dshi_0478at 463.512 kb on - strand, within Dshi_0478at 463.515 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.522 kb on + strand, within Dshi_0478at 463.522 kb on + strand, within Dshi_0478at 463.523 kb on + strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.539 kb on + strand, within Dshi_0478at 463.561 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.574 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.582 kb on - strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.584 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.596 kb on + strand, within Dshi_0478at 463.613 kb on + strand, within Dshi_0478at 463.631 kb on + strand, within Dshi_0478at 463.654 kb on + strand, within Dshi_0478at 463.664 kb on + strand, within Dshi_0478at 463.672 kb on - strand, within Dshi_0478at 463.672 kb on - strand, within Dshi_0478at 463.724 kb on + strand, within Dshi_0478at 463.728 kb on + strand, within Dshi_0478at 463.729 kb on + strand, within Dshi_0478at 463.757 kb on - strand, within Dshi_0478at 463.774 kb on + strand, within Dshi_0478at 463.775 kb on - strand, within Dshi_0478at 463.784 kb on - strand, within Dshi_0478at 463.802 kb on + strand, within Dshi_0478at 463.831 kb on + strand, within Dshi_0478at 463.856 kb on - strand, within Dshi_0478at 463.919 kb on - strand, within Dshi_0478at 463.920 kb on + strand, within Dshi_0478at 463.936 kb on - strand, within Dshi_0478at 463.937 kb on + strand, within Dshi_0478at 463.941 kb on - strand, within Dshi_0478at 463.970 kb on + strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.996 kb on - strand, within Dshi_0478at 464.076 kb on + strandat 464.077 kb on - strandat 464.172 kb on - strandat 464.219 kb on + strand, within Dshi_0479at 464.224 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.236 kb on + strand, within Dshi_0479at 464.247 kb on + strand, within Dshi_0479at 464.255 kb on + strandat 464.265 kb on + strand, within Dshi_0479

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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461,745 - Dshi_0476 0.49 -0.2
461,793 - Dshi_0476 0.52 -1.0
461,808 + Dshi_0476 0.53 -0.0
461,816 - Dshi_0476 0.53 -0.2
461,818 + Dshi_0476 0.53 -0.2
461,879 - Dshi_0476 0.57 -1.7
461,907 + Dshi_0476 0.58 +0.8
461,907 + Dshi_0476 0.58 -0.4
461,908 - Dshi_0476 0.58 -1.4
461,908 - Dshi_0476 0.58 +0.2
461,915 - Dshi_0476 0.59 -0.2
461,915 - Dshi_0476 0.59 +0.5
461,915 - Dshi_0476 0.59 +0.2
461,923 - Dshi_0476 0.59 -0.7
461,958 + Dshi_0476 0.61 -0.2
461,966 - Dshi_0476 0.62 -0.1
461,983 + Dshi_0476 0.62 +0.0
461,987 - Dshi_0476 0.63 +0.1
462,032 + Dshi_0476 0.65 +0.4
462,042 + Dshi_0476 0.66 +0.1
462,060 - Dshi_0476 0.67 +0.5
462,067 - Dshi_0476 0.67 +0.6
462,067 - Dshi_0476 0.67 +0.7
462,074 + Dshi_0476 0.67 -0.4
462,077 - Dshi_0476 0.68 +1.1
462,140 - Dshi_0476 0.71 +0.4
462,181 - Dshi_0476 0.73 -0.2
462,199 + Dshi_0476 0.74 -0.0
462,204 + Dshi_0476 0.75 +0.8
462,212 - Dshi_0476 0.75 -0.3
462,212 - Dshi_0476 0.75 -0.6
462,222 - Dshi_0476 0.76 +0.1
462,228 - Dshi_0476 0.76 +0.1
462,360 + Dshi_0476 0.83 -0.3
462,371 + Dshi_0476 0.84 -0.8
462,377 - Dshi_0476 0.84 +0.3
462,403 - Dshi_0476 0.86 +0.1
462,428 - Dshi_0476 0.87 +0.5
462,434 - Dshi_0476 0.87 -0.0
462,509 + +0.2
462,535 + -0.8
462,547 + -0.4
462,592 + -0.0
462,603 - +0.4
462,603 - +0.9
462,603 - +1.2
462,608 - +0.4
462,613 + +0.2
462,621 - +0.4
462,621 - -0.3
462,639 - -0.3
462,715 + +0.0
462,742 + -0.2
462,757 + -0.6
462,765 - -0.7
462,800 + Dshi_0477 0.10 -0.5
462,857 + Dshi_0477 0.21 -0.2
462,860 - Dshi_0477 0.21 +0.1
462,891 - Dshi_0477 0.27 -0.3
462,891 - Dshi_0477 0.27 -1.2
462,911 + Dshi_0477 0.31 -0.2
462,914 + Dshi_0477 0.31 -0.8
462,924 + Dshi_0477 0.33 -0.1
462,932 - Dshi_0477 0.34 +2.1
462,932 - Dshi_0477 0.34 -0.5
462,973 - Dshi_0477 0.42 +0.2
462,973 - Dshi_0477 0.42 -0.0
462,985 + Dshi_0477 0.44 -0.8
462,993 - Dshi_0477 0.46 -0.2
462,995 + Dshi_0477 0.46 -1.4
463,004 - Dshi_0477 0.48 -0.5
463,014 - Dshi_0477 0.49 +0.0
463,021 + Dshi_0477 0.51 -0.4
463,027 + Dshi_0477 0.52 -0.5
463,028 + Dshi_0477 0.52 -0.0
463,034 - Dshi_0477 0.53 +0.2
463,041 - Dshi_0477 0.54 -0.3
463,060 - Dshi_0477 0.58 +2.8
463,073 - Dshi_0477 0.60 -0.4
463,100 - Dshi_0477 0.65 -0.3
463,173 - Dshi_0477 0.79 +0.1
463,194 - Dshi_0477 0.82 -0.5
463,207 + Dshi_0477 0.85 +1.1
463,210 + Dshi_0477 0.85 -0.6
463,259 - -1.4
463,287 - -0.3
463,301 + -0.1
463,321 - -0.5
463,354 + +0.0
463,361 + Dshi_0478 0.10 -1.3
463,361 + Dshi_0478 0.10 -0.3
463,369 - Dshi_0478 0.11 -0.6
463,369 - Dshi_0478 0.11 -0.1
463,391 - Dshi_0478 0.14 +0.3
463,392 + Dshi_0478 0.14 -0.3
463,395 - Dshi_0478 0.14 +0.0
463,395 - Dshi_0478 0.14 -0.7
463,400 - Dshi_0478 0.15 -0.6
463,421 + Dshi_0478 0.17 +0.2
463,462 - Dshi_0478 0.22 +0.2
463,492 + Dshi_0478 0.26 +0.6
463,492 + Dshi_0478 0.26 +0.3
463,492 + Dshi_0478 0.26 -0.4
463,502 + Dshi_0478 0.27 -1.4
463,508 + Dshi_0478 0.28 +0.1
463,512 - Dshi_0478 0.28 -1.8
463,515 + Dshi_0478 0.29 -0.0
463,516 + Dshi_0478 0.29 -0.1
463,516 + Dshi_0478 0.29 +0.2
463,516 + Dshi_0478 0.29 +0.0
463,522 + Dshi_0478 0.29 -0.4
463,522 + Dshi_0478 0.29 -1.2
463,523 + Dshi_0478 0.29 -0.1
463,524 - Dshi_0478 0.30 -1.5
463,524 - Dshi_0478 0.30 +0.2
463,524 - Dshi_0478 0.30 +1.1
463,539 + Dshi_0478 0.31 +0.0
463,561 + Dshi_0478 0.34 -1.0
463,571 + Dshi_0478 0.35 +0.2
463,571 + Dshi_0478 0.35 -1.0
463,571 + Dshi_0478 0.35 -0.5
463,571 + Dshi_0478 0.35 -0.3
463,574 + Dshi_0478 0.35 +0.2
463,576 + Dshi_0478 0.36 -1.0
463,576 + Dshi_0478 0.36 +0.9
463,576 + Dshi_0478 0.36 -0.1
463,576 + Dshi_0478 0.36 -0.1
463,579 - Dshi_0478 0.36 +0.8
463,579 - Dshi_0478 0.36 +0.2
463,579 - Dshi_0478 0.36 -0.4
463,582 - Dshi_0478 0.36 -0.2
463,583 + Dshi_0478 0.37 -0.5
463,583 + Dshi_0478 0.37 -0.0
463,583 + Dshi_0478 0.37 +0.0
463,584 - Dshi_0478 0.37 -0.0
463,591 - Dshi_0478 0.37 -0.5
463,591 - Dshi_0478 0.37 +0.6
463,591 - Dshi_0478 0.37 +0.0
463,596 + Dshi_0478 0.38 +0.4
463,613 + Dshi_0478 0.40 +0.8
463,631 + Dshi_0478 0.42 -0.4
463,654 + Dshi_0478 0.45 +0.2
463,664 + Dshi_0478 0.46 -0.2
463,672 - Dshi_0478 0.47 -0.6
463,672 - Dshi_0478 0.47 -0.6
463,724 + Dshi_0478 0.53 +0.8
463,728 + Dshi_0478 0.54 +0.1
463,729 + Dshi_0478 0.54 +0.2
463,757 - Dshi_0478 0.57 +0.0
463,774 + Dshi_0478 0.59 +0.1
463,775 - Dshi_0478 0.59 -0.2
463,784 - Dshi_0478 0.60 +0.6
463,802 + Dshi_0478 0.62 +1.3
463,831 + Dshi_0478 0.66 +0.4
463,856 - Dshi_0478 0.69 +0.2
463,919 - Dshi_0478 0.76 -1.1
463,920 + Dshi_0478 0.76 -1.0
463,936 - Dshi_0478 0.78 -1.2
463,937 + Dshi_0478 0.78 -0.1
463,941 - Dshi_0478 0.79 -0.3
463,970 + Dshi_0478 0.82 +0.7
463,978 - Dshi_0478 0.83 -0.6
463,978 - Dshi_0478 0.83 -0.8
463,996 - Dshi_0478 0.85 -0.4
464,076 + +0.4
464,077 - +0.3
464,172 - +0.8
464,219 + Dshi_0479 0.18 -0.1
464,224 + Dshi_0479 0.19 -0.4
464,230 + Dshi_0479 0.20 +0.6
464,230 + Dshi_0479 0.20 +0.2
464,236 + Dshi_0479 0.21 -0.6
464,247 + Dshi_0479 0.23 -0.5
464,255 + +0.4
464,265 + Dshi_0479 0.27 -0.4

Or see this region's nucleotide sequence