Experiment: MoYLS4 with peroxynitrite 200uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0375 and DVU0376 are separated by 21 nucleotides DVU0376 and trxB-1 are separated by 3 nucleotides trxB-1 and DVU0378 are separated by 18 nucleotides DVU0378 and DVU0379 are separated by 22 nucleotides
DVU0375: DVU0375 - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 425,986 to 427,215
DVU0375
DVU0376: DVU0376 - hypothetical protein (TIGR), at 427,237 to 427,503
DVU0376
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457
DVU0379
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 426.529 kb on - strand, within DVU0375 at 426.549 kb on + strand, within DVU0375 at 426.552 kb on - strand, within DVU0375 at 426.605 kb on + strand, within DVU0375 at 426.614 kb on + strand, within DVU0375 at 426.622 kb on - strand, within DVU0375 at 426.678 kb on + strand, within DVU0375 at 426.779 kb on - strand, within DVU0375 at 426.782 kb on + strand, within DVU0375 at 426.783 kb on + strand, within DVU0375 at 426.816 kb on - strand, within DVU0375 at 426.942 kb on - strand, within DVU0375 at 426.946 kb on - strand, within DVU0375 at 426.965 kb on - strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.042 kb on - strand, within DVU0375 at 427.047 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.066 kb on - strand, within DVU0375 at 427.115 kb on + strand at 427.257 kb on + strand at 427.359 kb on - strand, within DVU0376 at 427.430 kb on + strand, within DVU0376 at 427.441 kb on + strand, within DVU0376 at 427.502 kb on - strand at 427.504 kb on + strand at 427.546 kb on - strand at 427.553 kb on - strand at 427.645 kb on + strand, within trxB-1 at 427.645 kb on + strand, within trxB-1 at 427.753 kb on + strand, within trxB-1 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1 at 428.568 kb on + strand, within DVU0378 at 428.568 kb on + strand, within DVU0378 at 428.651 kb on + strand, within DVU0378 at 428.664 kb on + strand, within DVU0378 at 428.786 kb on - strand at 428.940 kb on + strand, within DVU0379 at 428.949 kb on + strand, within DVU0379 at 428.957 kb on - strand, within DVU0379 at 429.022 kb on - strand, within DVU0379 at 429.077 kb on - strand, within DVU0379 at 429.227 kb on - strand, within DVU0379 at 429.272 kb on - strand, within DVU0379 at 429.317 kb on + strand, within DVU0379 at 429.402 kb on - strand at 429.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM remove 426,529 - DVU0375 0.44 +0.0 426,549 + DVU0375 0.46 +1.1 426,552 - DVU0375 0.46 -0.6 426,605 + DVU0375 0.50 -0.3 426,614 + DVU0375 0.51 -0.2 426,622 - DVU0375 0.52 -0.1 426,678 + DVU0375 0.56 -0.5 426,779 - DVU0375 0.64 -0.6 426,782 + DVU0375 0.65 -0.8 426,783 + DVU0375 0.65 -1.3 426,816 - DVU0375 0.67 -1.0 426,942 - DVU0375 0.78 +1.1 426,946 - DVU0375 0.78 -0.1 426,965 - DVU0375 0.80 +0.6 427,034 + DVU0375 0.85 +0.1 427,034 + DVU0375 0.85 +0.4 427,042 - DVU0375 0.86 -1.8 427,047 + DVU0375 0.86 -1.1 427,052 + DVU0375 0.87 -0.5 427,052 + DVU0375 0.87 -1.3 427,063 + DVU0375 0.88 -1.0 427,063 + DVU0375 0.88 +0.1 427,066 - DVU0375 0.88 +0.1 427,115 + -1.8 427,257 + -0.4 427,359 - DVU0376 0.46 +0.8 427,430 + DVU0376 0.72 -1.1 427,441 + DVU0376 0.76 -0.2 427,502 - -2.0 427,504 + +0.2 427,546 - -0.0 427,553 - -2.5 427,645 + trxB-1 DVU0377 0.15 -1.8 427,645 + trxB-1 DVU0377 0.15 +0.5 427,753 + trxB-1 DVU0377 0.27 +2.8 427,785 + trxB-1 DVU0377 0.30 +2.1 427,795 + trxB-1 DVU0377 0.31 +0.1 427,950 - trxB-1 DVU0377 0.48 +1.7 427,951 + trxB-1 DVU0377 0.48 +0.7 428,116 + trxB-1 DVU0377 0.66 -1.9 428,143 - trxB-1 DVU0377 0.69 -0.3 428,210 - trxB-1 DVU0377 0.77 -0.1 428,285 + trxB-1 DVU0377 0.85 -0.2 428,568 + DVU0378 0.40 +0.8 428,568 + DVU0378 0.40 -0.0 428,651 + DVU0378 0.66 +0.1 428,664 + DVU0378 0.70 -0.5 428,786 - -0.6 428,940 + DVU0379 0.24 +0.3 428,949 + DVU0379 0.25 -1.1 428,957 - DVU0379 0.26 +0.5 429,022 - DVU0379 0.36 -1.4 429,077 - DVU0379 0.44 -0.5 429,227 - DVU0379 0.66 +1.2 429,272 - DVU0379 0.73 +0.2 429,317 + DVU0379 0.79 -0.9 429,402 - +0.2 429,411 - -0.5
Or see this region's nucleotide sequence