Experiment: MoYLS4 with peroxynitrite 200uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0243 and DVU0244 are separated by 59 nucleotides DVU0244 and DVU0245 are separated by 29 nucleotides DVU0245 and DVU0246 are separated by 178 nucleotides
DVU0243: DVU0243 - lipoprotein, putative (TIGR), at 275,444 to 276,112
DVU0243
DVU0244: DVU0244 - hypothetical protein (TIGR), at 276,172 to 277,029
DVU0244
DVU0245: DVU0245 - protein phosphatase, putative (TIGR), at 277,059 to 278,168
DVU0245
DVU0246: DVU0246 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 278,347 to 280,581
DVU0246
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 276.094 kb on + strand at 276.114 kb on + strand at 276.198 kb on + strand at 276.213 kb on + strand at 276.231 kb on - strand at 276.262 kb on + strand, within DVU0244 at 276.270 kb on - strand, within DVU0244 at 276.275 kb on - strand, within DVU0244 at 276.298 kb on + strand, within DVU0244 at 276.516 kb on - strand, within DVU0244 at 276.556 kb on - strand, within DVU0244 at 276.568 kb on - strand, within DVU0244 at 276.573 kb on - strand, within DVU0244 at 276.601 kb on - strand, within DVU0244 at 276.614 kb on - strand, within DVU0244 at 276.748 kb on + strand, within DVU0244 at 276.775 kb on + strand, within DVU0244 at 276.969 kb on + strand at 277.044 kb on - strand at 277.057 kb on + strand at 277.065 kb on - strand at 277.207 kb on - strand, within DVU0245 at 277.207 kb on - strand, within DVU0245 at 277.278 kb on + strand, within DVU0245 at 277.378 kb on - strand, within DVU0245 at 277.387 kb on + strand, within DVU0245 at 277.406 kb on + strand, within DVU0245 at 277.464 kb on - strand, within DVU0245 at 277.464 kb on - strand, within DVU0245 at 277.503 kb on + strand, within DVU0245 at 277.513 kb on - strand, within DVU0245 at 277.762 kb on + strand, within DVU0245 at 277.793 kb on + strand, within DVU0245 at 277.821 kb on + strand, within DVU0245 at 277.848 kb on + strand, within DVU0245 at 277.856 kb on - strand, within DVU0245 at 277.888 kb on - strand, within DVU0245 at 277.948 kb on + strand, within DVU0245 at 277.999 kb on - strand, within DVU0245 at 278.002 kb on + strand, within DVU0245 at 278.105 kb on + strand at 278.108 kb on - strand at 278.140 kb on + strand at 278.148 kb on - strand at 278.148 kb on - strand at 278.171 kb on - strand at 278.171 kb on - strand at 278.171 kb on - strand at 278.179 kb on - strand at 278.179 kb on - strand at 278.249 kb on + strand at 278.252 kb on + strand at 278.269 kb on + strand at 278.302 kb on + strand at 278.326 kb on + strand at 278.363 kb on + strand at 278.363 kb on + strand at 278.371 kb on - strand at 278.380 kb on - strand at 278.464 kb on - strand at 278.528 kb on + strand at 278.528 kb on + strand at 278.528 kb on + strand at 278.536 kb on - strand at 278.536 kb on - strand at 278.536 kb on - strand at 278.589 kb on + strand, within DVU0246 at 278.634 kb on + strand, within DVU0246 at 278.642 kb on - strand, within DVU0246 at 278.653 kb on - strand, within DVU0246 at 278.668 kb on - strand, within DVU0246 at 278.762 kb on + strand, within DVU0246 at 278.871 kb on + strand, within DVU0246 at 278.871 kb on + strand, within DVU0246 at 278.934 kb on - strand, within DVU0246 at 278.983 kb on - strand, within DVU0246 at 279.025 kb on + strand, within DVU0246 at 279.031 kb on - strand, within DVU0246 at 279.037 kb on + strand, within DVU0246 at 279.070 kb on + strand, within DVU0246 at 279.168 kb on + strand, within DVU0246
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM remove 276,094 + -0.7 276,114 + +0.1 276,198 + +2.0 276,213 + +0.2 276,231 - -0.2 276,262 + DVU0244 0.10 +2.8 276,270 - DVU0244 0.11 +0.1 276,275 - DVU0244 0.12 -1.7 276,298 + DVU0244 0.15 -0.7 276,516 - DVU0244 0.40 -0.1 276,556 - DVU0244 0.45 -0.5 276,568 - DVU0244 0.46 -0.7 276,573 - DVU0244 0.47 +0.9 276,601 - DVU0244 0.50 -0.4 276,614 - DVU0244 0.52 +1.5 276,748 + DVU0244 0.67 +0.1 276,775 + DVU0244 0.70 +0.2 276,969 + -0.4 277,044 - -1.4 277,057 + -0.5 277,065 - -0.1 277,207 - DVU0245 0.13 -1.1 277,207 - DVU0245 0.13 -0.9 277,278 + DVU0245 0.20 -0.5 277,378 - DVU0245 0.29 -0.7 277,387 + DVU0245 0.30 -2.0 277,406 + DVU0245 0.31 -0.7 277,464 - DVU0245 0.36 -2.1 277,464 - DVU0245 0.36 -2.3 277,503 + DVU0245 0.40 -0.5 277,513 - DVU0245 0.41 +1.5 277,762 + DVU0245 0.63 -0.3 277,793 + DVU0245 0.66 -0.0 277,821 + DVU0245 0.69 -1.1 277,848 + DVU0245 0.71 -0.6 277,856 - DVU0245 0.72 +2.8 277,888 - DVU0245 0.75 -1.1 277,948 + DVU0245 0.80 -0.5 277,999 - DVU0245 0.85 -0.1 278,002 + DVU0245 0.85 -1.5 278,105 + +0.2 278,108 - -0.9 278,140 + -2.1 278,148 - -1.4 278,148 - +0.5 278,171 - -0.1 278,171 - +0.5 278,171 - -2.5 278,179 - -0.9 278,179 - -0.7 278,249 + -0.8 278,252 + +1.0 278,269 + -0.5 278,302 + +0.7 278,326 + +0.9 278,363 + -2.5 278,363 + +0.1 278,371 - -0.2 278,380 - +0.3 278,464 - -1.5 278,528 + +1.5 278,528 + -0.5 278,528 + -0.4 278,536 - -0.7 278,536 - -1.1 278,536 - -0.7 278,589 + DVU0246 0.11 -1.3 278,634 + DVU0246 0.13 +0.5 278,642 - DVU0246 0.13 -0.1 278,653 - DVU0246 0.14 -0.3 278,668 - DVU0246 0.14 -0.6 278,762 + DVU0246 0.19 -1.3 278,871 + DVU0246 0.23 -0.5 278,871 + DVU0246 0.23 -2.1 278,934 - DVU0246 0.26 -1.5 278,983 - DVU0246 0.28 -1.3 279,025 + DVU0246 0.30 -1.2 279,031 - DVU0246 0.31 -1.7 279,037 + DVU0246 0.31 -1.2 279,070 + DVU0246 0.32 -0.4 279,168 + DVU0246 0.37 +0.9
Or see this region's nucleotide sequence