Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0848

Experiment: MoYLS4 with peroxynitrite 200uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntApsA and QmoA are separated by 145 nucleotidesQmoA and QmoB are separated by 6 nucleotides DVU0847: ApsA - adenylyl-sulphate reductase, alpha subunit (TIGR), at 933,621 to 935,615 ApsA DVU0848: QmoA - Quinone-interacting membrane-bound oxidoreductase (Shelley Haveman), at 935,761 to 936,999 QmoA DVU0849: QmoB - Quinone-interacting membrane-bound oxidoreductase (Shelley Haveman), at 937,006 to 939,282 QmoB Position (kb) 935 936 937Strain fitness (log2 ratio) -1 0 1at 935.683 kb on - strandat 935.683 kb on - strandat 935.719 kb on - strandat 935.719 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM
remove
935,683 - -0.6
935,683 - +0.6
935,719 - -0.7
935,719 - -0.2

Or see this region's nucleotide sequence