Experiment: MoYLS4 with peroxynitrite 200uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0738 and DVU0739 are separated by 126 nucleotides DVU0739 and DVU0740 are separated by 276 nucleotides
DVU0738: DVU0738 - substrate-binding protein, putative (TIGR), at 825,817 to 826,938
DVU0738
DVU0739: DVU0739 - conserved hypothetical protein TIGR00296 (TIGR), at 827,065 to 827,637
DVU0739
DVU0740: DVU0740 - membrane protein, putative (TIGR), at 827,914 to 829,089
DVU0740
Position (kb) 827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.081 kb on + strand, within DVU0738 at 826.114 kb on + strand, within DVU0738 at 826.126 kb on + strand, within DVU0738 at 826.134 kb on - strand, within DVU0738 at 826.166 kb on + strand, within DVU0738 at 826.207 kb on + strand, within DVU0738 at 826.326 kb on + strand, within DVU0738 at 826.334 kb on - strand, within DVU0738 at 826.341 kb on - strand, within DVU0738 at 826.354 kb on - strand, within DVU0738 at 826.378 kb on - strand, within DVU0738 at 826.378 kb on - strand, within DVU0738 at 826.468 kb on + strand, within DVU0738 at 826.469 kb on + strand, within DVU0738 at 826.488 kb on + strand, within DVU0738 at 826.538 kb on + strand, within DVU0738 at 826.553 kb on + strand, within DVU0738 at 826.575 kb on + strand, within DVU0738 at 826.653 kb on - strand, within DVU0738 at 826.705 kb on - strand, within DVU0738 at 826.725 kb on + strand, within DVU0738 at 826.757 kb on + strand, within DVU0738 at 826.757 kb on + strand, within DVU0738 at 826.765 kb on - strand, within DVU0738 at 826.787 kb on - strand, within DVU0738 at 826.795 kb on + strand, within DVU0738 at 826.832 kb on + strand at 826.919 kb on - strand at 826.921 kb on + strand at 826.924 kb on - strand at 827.045 kb on - strand at 827.050 kb on - strand at 827.116 kb on - strand at 827.207 kb on - strand, within DVU0739 at 827.246 kb on - strand, within DVU0739 at 827.299 kb on - strand, within DVU0739 at 827.299 kb on - strand, within DVU0739 at 827.316 kb on + strand, within DVU0739 at 827.359 kb on + strand, within DVU0739 at 827.412 kb on - strand, within DVU0739 at 827.414 kb on + strand, within DVU0739 at 827.417 kb on - strand, within DVU0739 at 827.417 kb on - strand, within DVU0739 at 827.487 kb on - strand, within DVU0739 at 827.521 kb on + strand, within DVU0739 at 827.521 kb on + strand, within DVU0739 at 827.521 kb on + strand, within DVU0739 at 827.521 kb on + strand, within DVU0739 at 827.529 kb on - strand, within DVU0739 at 827.529 kb on - strand, within DVU0739 at 827.552 kb on + strand, within DVU0739 at 827.565 kb on - strand, within DVU0739 at 827.711 kb on + strand at 827.711 kb on + strand at 827.787 kb on - strand at 827.787 kb on - strand at 827.787 kb on - strand at 827.851 kb on + strand at 827.861 kb on - strand at 827.992 kb on + strand at 828.037 kb on + strand, within DVU0740 at 828.037 kb on - strand, within DVU0740 at 828.052 kb on - strand, within DVU0740 at 828.052 kb on - strand, within DVU0740 at 828.052 kb on - strand, within DVU0740 at 828.071 kb on + strand, within DVU0740 at 828.071 kb on + strand, within DVU0740 at 828.076 kb on + strand, within DVU0740 at 828.079 kb on - strand, within DVU0740 at 828.083 kb on - strand, within DVU0740 at 828.202 kb on + strand, within DVU0740 at 828.332 kb on - strand, within DVU0740 at 828.413 kb on + strand, within DVU0740 at 828.423 kb on + strand, within DVU0740 at 828.423 kb on + strand, within DVU0740 at 828.423 kb on + strand, within DVU0740 at 828.423 kb on + strand, within DVU0740 at 828.500 kb on - strand, within DVU0740 at 828.505 kb on - strand, within DVU0740 at 828.513 kb on + strand, within DVU0740 at 828.515 kb on - strand, within DVU0740
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with peroxynitrite 200uM remove 826,081 + DVU0738 0.24 -0.6 826,114 + DVU0738 0.26 +0.0 826,126 + DVU0738 0.28 +0.1 826,134 - DVU0738 0.28 -1.2 826,166 + DVU0738 0.31 -1.4 826,207 + DVU0738 0.35 -0.6 826,326 + DVU0738 0.45 +1.8 826,334 - DVU0738 0.46 -1.1 826,341 - DVU0738 0.47 +1.0 826,354 - DVU0738 0.48 -0.1 826,378 - DVU0738 0.50 -1.1 826,378 - DVU0738 0.50 -0.3 826,468 + DVU0738 0.58 +0.6 826,469 + DVU0738 0.58 -0.2 826,488 + DVU0738 0.60 -0.3 826,538 + DVU0738 0.64 -0.1 826,553 + DVU0738 0.66 -1.7 826,575 + DVU0738 0.68 -0.6 826,653 - DVU0738 0.75 +0.2 826,705 - DVU0738 0.79 -0.2 826,725 + DVU0738 0.81 -0.5 826,757 + DVU0738 0.84 -1.0 826,757 + DVU0738 0.84 -1.0 826,765 - DVU0738 0.84 -1.0 826,787 - DVU0738 0.86 -0.5 826,795 + DVU0738 0.87 -0.5 826,832 + -0.2 826,919 - -0.6 826,921 + +0.6 826,924 - -0.0 827,045 - -0.8 827,050 - -0.5 827,116 - -0.7 827,207 - DVU0739 0.25 -0.3 827,246 - DVU0739 0.32 -0.2 827,299 - DVU0739 0.41 +1.8 827,299 - DVU0739 0.41 +0.6 827,316 + DVU0739 0.44 +0.6 827,359 + DVU0739 0.51 +0.3 827,412 - DVU0739 0.61 -0.4 827,414 + DVU0739 0.61 -0.4 827,417 - DVU0739 0.61 -1.1 827,417 - DVU0739 0.61 +0.0 827,487 - DVU0739 0.74 -0.3 827,521 + DVU0739 0.80 +0.0 827,521 + DVU0739 0.80 -0.4 827,521 + DVU0739 0.80 +0.4 827,521 + DVU0739 0.80 -0.3 827,529 - DVU0739 0.81 +1.0 827,529 - DVU0739 0.81 -0.6 827,552 + DVU0739 0.85 +0.3 827,565 - DVU0739 0.87 +0.6 827,711 + +0.1 827,711 + +0.3 827,787 - +0.4 827,787 - +0.6 827,787 - +1.6 827,851 + +2.2 827,861 - -0.9 827,992 + -2.2 828,037 + DVU0740 0.10 -1.3 828,037 - DVU0740 0.10 +2.2 828,052 - DVU0740 0.12 -1.4 828,052 - DVU0740 0.12 -0.6 828,052 - DVU0740 0.12 -0.3 828,071 + DVU0740 0.13 +1.4 828,071 + DVU0740 0.13 -0.3 828,076 + DVU0740 0.14 -1.9 828,079 - DVU0740 0.14 -0.3 828,083 - DVU0740 0.14 -2.7 828,202 + DVU0740 0.24 +0.9 828,332 - DVU0740 0.36 -0.4 828,413 + DVU0740 0.42 -2.5 828,423 + DVU0740 0.43 -0.4 828,423 + DVU0740 0.43 +0.4 828,423 + DVU0740 0.43 +1.6 828,423 + DVU0740 0.43 -1.1 828,500 - DVU0740 0.50 +0.6 828,505 - DVU0740 0.50 -0.0 828,513 + DVU0740 0.51 -1.0 828,515 - DVU0740 0.51 -0.2
Or see this region's nucleotide sequence