Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08300

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08290 and PGA1_c08300 are separated by 81 nucleotidesPGA1_c08300 and PGA1_c08310 overlap by 4 nucleotidesPGA1_c08310 and PGA1_c08320 are separated by 316 nucleotides PGA1_c08290: PGA1_c08290 - putative peptidase M75, at 859,002 to 860,270 _c08290 PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858 _c08300 PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040 _c08310 PGA1_c08320: PGA1_c08320 - transcriptional regulator, LysR family, at 861,357 to 862,178 _c08320 Position (kb) 860 861Strain fitness (log2 ratio) -2 -1 0 1 2at 859.415 kb on - strand, within PGA1_c08290at 859.447 kb on - strand, within PGA1_c08290at 859.454 kb on - strand, within PGA1_c08290at 859.500 kb on - strand, within PGA1_c08290at 859.658 kb on - strand, within PGA1_c08290at 859.780 kb on + strand, within PGA1_c08290at 859.794 kb on - strand, within PGA1_c08290at 859.794 kb on - strand, within PGA1_c08290at 859.853 kb on + strand, within PGA1_c08290at 859.853 kb on + strand, within PGA1_c08290at 859.853 kb on + strand, within PGA1_c08290at 859.853 kb on + strand, within PGA1_c08290at 859.858 kb on + strand, within PGA1_c08290at 859.858 kb on + strand, within PGA1_c08290at 859.861 kb on - strand, within PGA1_c08290at 859.861 kb on - strand, within PGA1_c08290at 859.861 kb on - strand, within PGA1_c08290at 859.861 kb on - strand, within PGA1_c08290at 859.886 kb on + strand, within PGA1_c08290at 860.081 kb on - strand, within PGA1_c08290at 860.103 kb on + strand, within PGA1_c08290at 860.132 kb on + strand, within PGA1_c08290at 860.132 kb on + strand, within PGA1_c08290at 860.132 kb on + strand, within PGA1_c08290at 860.140 kb on - strand, within PGA1_c08290at 860.140 kb on - strand, within PGA1_c08290at 860.140 kb on - strand, within PGA1_c08290at 860.140 kb on - strand, within PGA1_c08290at 860.140 kb on - strand, within PGA1_c08290at 860.145 kb on - strandat 860.147 kb on + strandat 860.178 kb on + strandat 860.186 kb on + strandat 860.186 kb on + strandat 860.186 kb on + strandat 860.268 kb on + strandat 860.280 kb on + strandat 860.280 kb on + strandat 860.280 kb on + strandat 860.280 kb on + strandat 860.280 kb on + strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.288 kb on - strandat 860.308 kb on - strandat 860.323 kb on - strandat 860.323 kb on - strandat 860.323 kb on - strandat 860.463 kb on + strand, within PGA1_c08300at 860.516 kb on + strand, within PGA1_c08300at 860.572 kb on + strand, within PGA1_c08300at 860.580 kb on - strand, within PGA1_c08300at 860.584 kb on + strand, within PGA1_c08300at 860.597 kb on - strand, within PGA1_c08300at 860.597 kb on - strand, within PGA1_c08300at 860.673 kb on + strand, within PGA1_c08300at 860.681 kb on - strand, within PGA1_c08300at 860.693 kb on - strand, within PGA1_c08300at 860.743 kb on - strand, within PGA1_c08300at 860.764 kb on + strand, within PGA1_c08300at 860.804 kb on + strand, within PGA1_c08300at 860.814 kb on + strandat 860.906 kb on - strand, within PGA1_c08310at 860.906 kb on - strand, within PGA1_c08310at 860.906 kb on - strand, within PGA1_c08310at 860.989 kb on + strand, within PGA1_c08310at 860.991 kb on + strand, within PGA1_c08310at 860.992 kb on - strand, within PGA1_c08310at 861.034 kb on + strandat 861.037 kb on - strandat 861.085 kb on + strandat 861.093 kb on - strandat 861.223 kb on - strandat 861.233 kb on + strandat 861.238 kb on + strandat 861.241 kb on - strandat 861.243 kb on + strandat 861.245 kb on + strandat 861.253 kb on + strandat 861.253 kb on - strandat 861.261 kb on - strandat 861.326 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.367 kb on + strandat 861.374 kb on - strandat 861.377 kb on + strandat 861.425 kb on + strandat 861.436 kb on + strandat 861.438 kb on - strandat 861.444 kb on - strand, within PGA1_c08320at 861.453 kb on - strand, within PGA1_c08320at 861.545 kb on - strand, within PGA1_c08320at 861.547 kb on + strand, within PGA1_c08320at 861.555 kb on - strand, within PGA1_c08320at 861.582 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.743 kb on - strand, within PGA1_c08320at 861.755 kb on + strand, within PGA1_c08320at 861.800 kb on - strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.805 kb on + strand, within PGA1_c08320at 861.811 kb on - strand, within PGA1_c08320at 861.850 kb on - strand, within PGA1_c08320

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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859,415 - PGA1_c08290 0.33 +0.0
859,447 - PGA1_c08290 0.35 +0.4
859,454 - PGA1_c08290 0.36 -0.0
859,500 - PGA1_c08290 0.39 +0.8
859,658 - PGA1_c08290 0.52 -1.1
859,780 + PGA1_c08290 0.61 +0.6
859,794 - PGA1_c08290 0.62 +0.4
859,794 - PGA1_c08290 0.62 +0.1
859,853 + PGA1_c08290 0.67 +1.1
859,853 + PGA1_c08290 0.67 +0.0
859,853 + PGA1_c08290 0.67 +0.0
859,853 + PGA1_c08290 0.67 -1.3
859,858 + PGA1_c08290 0.67 -0.3
859,858 + PGA1_c08290 0.67 +0.6
859,861 - PGA1_c08290 0.68 +0.1
859,861 - PGA1_c08290 0.68 -1.4
859,861 - PGA1_c08290 0.68 -0.4
859,861 - PGA1_c08290 0.68 -0.8
859,886 + PGA1_c08290 0.70 -1.5
860,081 - PGA1_c08290 0.85 +0.8
860,103 + PGA1_c08290 0.87 +0.0
860,132 + PGA1_c08290 0.89 +1.2
860,132 + PGA1_c08290 0.89 -0.4
860,132 + PGA1_c08290 0.89 -0.1
860,140 - PGA1_c08290 0.90 -0.2
860,140 - PGA1_c08290 0.90 -0.6
860,140 - PGA1_c08290 0.90 -1.7
860,140 - PGA1_c08290 0.90 -0.5
860,140 - PGA1_c08290 0.90 -1.5
860,145 - -0.4
860,147 + -0.7
860,178 + +1.3
860,186 + -0.1
860,186 + +0.8
860,186 + +0.9
860,268 + +0.9
860,280 + -1.4
860,280 + -0.2
860,280 + +0.2
860,280 + -1.2
860,280 + -0.4
860,288 - -0.4
860,288 - +0.6
860,288 - -1.0
860,288 - -0.6
860,288 - -0.3
860,288 - -0.3
860,288 - +0.6
860,308 - -0.3
860,323 - +0.0
860,323 - +0.2
860,323 - -1.3
860,463 + PGA1_c08300 0.22 +0.6
860,516 + PGA1_c08300 0.32 -0.1
860,572 + PGA1_c08300 0.43 -0.3
860,580 - PGA1_c08300 0.45 -0.4
860,584 + PGA1_c08300 0.46 -0.5
860,597 - PGA1_c08300 0.48 -0.6
860,597 - PGA1_c08300 0.48 +0.1
860,673 + PGA1_c08300 0.63 -0.7
860,681 - PGA1_c08300 0.65 -0.0
860,693 - PGA1_c08300 0.67 +0.4
860,743 - PGA1_c08300 0.77 +0.3
860,764 + PGA1_c08300 0.81 -0.7
860,804 + PGA1_c08300 0.89 +0.8
860,814 + +0.1
860,906 - PGA1_c08310 0.27 -1.7
860,906 - PGA1_c08310 0.27 -1.2
860,906 - PGA1_c08310 0.27 -0.4
860,989 + PGA1_c08310 0.72 -1.3
860,991 + PGA1_c08310 0.73 -1.2
860,992 - PGA1_c08310 0.74 -2.0
861,034 + -1.4
861,037 - -1.7
861,085 + -1.4
861,093 - +0.0
861,223 - -1.4
861,233 + -2.6
861,238 + +0.1
861,241 - -0.7
861,243 + -1.8
861,245 + -1.0
861,253 + -0.6
861,253 - -1.0
861,261 - -1.1
861,326 + -0.5
861,366 + +0.2
861,366 + +0.6
861,366 + +0.4
861,367 + -1.2
861,374 - +0.4
861,377 + -0.3
861,425 + +1.8
861,436 + -0.8
861,438 - +0.7
861,444 - PGA1_c08320 0.11 -1.0
861,453 - PGA1_c08320 0.12 -0.6
861,545 - PGA1_c08320 0.23 -0.2
861,547 + PGA1_c08320 0.23 -0.2
861,555 - PGA1_c08320 0.24 -0.1
861,582 + PGA1_c08320 0.27 -0.3
861,735 + PGA1_c08320 0.46 +0.4
861,735 + PGA1_c08320 0.46 -0.3
861,743 - PGA1_c08320 0.47 -0.2
861,755 + PGA1_c08320 0.48 -0.2
861,800 - PGA1_c08320 0.54 +0.1
861,803 + PGA1_c08320 0.54 -0.2
861,803 + PGA1_c08320 0.54 -0.1
861,805 + PGA1_c08320 0.55 +0.2
861,811 - PGA1_c08320 0.55 -2.0
861,850 - PGA1_c08320 0.60 -0.6

Or see this region's nucleotide sequence