Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01140 and PGA1_262p01150 are separated by 139 nucleotides PGA1_262p01150 and PGA1_262p01160 overlap by 30 nucleotides PGA1_262p01160 and PGA1_262p01165 are separated by 59 nucleotides PGA1_262p01165 and PGA1_262p01170 are separated by 118 nucleotides
PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435
_262p01140
PGA1_262p01150: PGA1_262p01150 - hypothetical protein, at 127,575 to 127,769
_262p01150
PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128
_262p01160
PGA1_262p01165: PGA1_262p01165 - hypothetical protein, at 129,188 to 129,568
_262p01165
PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910
_262p01170
Position (kb) 127
128
129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 126.753 kb on + strand, within PGA1_262p01140 at 126.980 kb on + strand at 127.276 kb on + strand at 127.359 kb on + strand at 127.385 kb on - strand at 127.385 kb on - strand at 127.411 kb on + strand at 127.419 kb on - strand at 127.470 kb on - strand at 127.518 kb on + strand at 127.647 kb on + strand, within PGA1_262p01150 at 127.959 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.018 kb on + strand, within PGA1_262p01160 at 128.023 kb on - strand, within PGA1_262p01160 at 128.150 kb on - strand, within PGA1_262p01160 at 128.410 kb on - strand, within PGA1_262p01160 at 128.503 kb on + strand, within PGA1_262p01160 at 128.574 kb on - strand, within PGA1_262p01160 at 128.762 kb on - strand, within PGA1_262p01160 at 128.773 kb on - strand, within PGA1_262p01160 at 128.907 kb on - strand, within PGA1_262p01160 at 129.123 kb on + strand at 129.124 kb on + strand at 129.167 kb on + strand at 129.176 kb on - strand at 129.190 kb on + strand at 129.238 kb on + strand, within PGA1_262p01165 at 129.371 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.582 kb on - strand at 129.643 kb on - strand at 129.735 kb on - strand at 129.740 kb on - strand at 129.740 kb on - strand at 129.783 kb on - strand at 129.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 126,753 + PGA1_262p01140 0.87 -0.3 126,980 + +0.5 127,276 + +1.1 127,359 + +1.5 127,385 - +0.3 127,385 - -0.9 127,411 + +0.6 127,419 - +0.1 127,470 - +0.5 127,518 + +0.4 127,647 + PGA1_262p01150 0.37 +0.4 127,959 + PGA1_262p01160 0.16 +0.1 128,015 + PGA1_262p01160 0.20 +0.1 128,015 + PGA1_262p01160 0.20 -0.8 128,018 + PGA1_262p01160 0.20 -0.1 128,023 - PGA1_262p01160 0.20 -1.2 128,150 - PGA1_262p01160 0.30 -0.1 128,410 - PGA1_262p01160 0.48 -1.1 128,503 + PGA1_262p01160 0.55 +0.1 128,574 - PGA1_262p01160 0.60 -1.0 128,762 - PGA1_262p01160 0.74 -0.9 128,773 - PGA1_262p01160 0.74 -0.6 128,907 - PGA1_262p01160 0.84 -1.5 129,123 + +0.7 129,124 + -1.2 129,167 + -2.3 129,176 - +0.4 129,190 + +1.2 129,238 + PGA1_262p01165 0.13 -0.7 129,371 - PGA1_262p01165 0.48 -0.6 129,516 - PGA1_262p01165 0.86 +0.5 129,516 - PGA1_262p01165 0.86 +0.5 129,582 - -1.1 129,643 - -1.2 129,735 - -0.6 129,740 - +0.1 129,740 - +0.7 129,783 - -0.5 129,802 - -0.5
Or see this region's nucleotide sequence