Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22945 and BWI76_RS22950 overlap by 8 nucleotides BWI76_RS22950 and BWI76_RS22955 are separated by 19 nucleotides BWI76_RS22955 and BWI76_RS22960 are separated by 353 nucleotides BWI76_RS22960 and BWI76_RS22965 are separated by 198 nucleotides
BWI76_RS22945: BWI76_RS22945 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,791,213 to 4,792,313
_RS22945
BWI76_RS22950: BWI76_RS22950 - membrane protein, at 4,792,306 to 4,792,701
_RS22950
BWI76_RS22955: BWI76_RS22955 - transcriptional regulator GcvA, at 4,792,721 to 4,793,638
_RS22955
BWI76_RS22960: BWI76_RS22960 - YgdI/YgdR family lipoprotein, at 4,793,992 to 4,794,216
_RS22960
BWI76_RS22965: BWI76_RS22965 - cysteine sulfinate desulfinase, at 4,794,415 to 4,795,620
_RS22965
Position (kb) 4792
4793
4794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4792.024 kb on + strand, within BWI76_RS22945 at 4792.229 kb on + strand at 4792.393 kb on - strand, within BWI76_RS22950 at 4792.436 kb on - strand, within BWI76_RS22950 at 4792.704 kb on - strand at 4792.705 kb on - strand at 4792.705 kb on - strand at 4792.805 kb on - strand at 4793.060 kb on + strand, within BWI76_RS22955 at 4793.359 kb on + strand, within BWI76_RS22955 at 4793.402 kb on - strand, within BWI76_RS22955 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.485 kb on + strand, within BWI76_RS22955 at 4793.636 kb on - strand at 4793.832 kb on + strand at 4793.923 kb on - strand at 4794.029 kb on + strand, within BWI76_RS22960 at 4794.168 kb on + strand, within BWI76_RS22960 at 4794.176 kb on - strand, within BWI76_RS22960 at 4794.266 kb on + strand at 4794.269 kb on - strand at 4794.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,792,024 + BWI76_RS22945 0.74 +0.3 4,792,229 + +0.2 4,792,393 - BWI76_RS22950 0.22 +0.2 4,792,436 - BWI76_RS22950 0.33 +0.3 4,792,704 - +4.9 4,792,705 - +0.4 4,792,705 - +0.2 4,792,805 - -3.3 4,793,060 + BWI76_RS22955 0.37 -3.5 4,793,359 + BWI76_RS22955 0.69 -4.1 4,793,402 - BWI76_RS22955 0.74 -1.6 4,793,485 + BWI76_RS22955 0.83 -3.7 4,793,485 + BWI76_RS22955 0.83 -3.1 4,793,636 - -2.5 4,793,832 + -1.1 4,793,923 - +1.1 4,794,029 + BWI76_RS22960 0.16 +2.4 4,794,168 + BWI76_RS22960 0.78 -0.4 4,794,176 - BWI76_RS22960 0.82 +0.9 4,794,266 + -0.4 4,794,269 - +1.1 4,794,422 + +0.3
Or see this region's nucleotide sequence