Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13830 and BWI76_RS13835 are separated by 184 nucleotides BWI76_RS13835 and BWI76_RS13840 are separated by 236 nucleotides BWI76_RS13840 and BWI76_RS13845 are separated by 114 nucleotides
BWI76_RS13830: BWI76_RS13830 - NAD-dependent malic enzyme, at 2,885,110 to 2,886,807
_RS13830
BWI76_RS13835: BWI76_RS13835 - 30S ribosomal protein S22, at 2,886,992 to 2,887,132
_RS13835
BWI76_RS13840: BWI76_RS13840 - MBL fold metallo-hydrolase, at 2,887,369 to 2,888,220
_RS13840
BWI76_RS13845: BWI76_RS13845 - LysR family transcriptional regulator, at 2,888,335 to 2,889,237
_RS13845
Position (kb)
2887
2888
2889 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2886.500 kb on - strand, within BWI76_RS13830 at 2886.526 kb on + strand, within BWI76_RS13830 at 2886.539 kb on + strand, within BWI76_RS13830 at 2886.702 kb on + strand at 2886.715 kb on + strand at 2886.750 kb on + strand at 2886.760 kb on + strand at 2886.761 kb on + strand at 2886.877 kb on - strand at 2886.886 kb on + strand at 2886.886 kb on + strand at 2886.886 kb on + strand at 2886.894 kb on - strand at 2886.894 kb on - strand at 2886.909 kb on - strand at 2887.140 kb on + strand at 2887.226 kb on + strand at 2887.327 kb on - strand at 2887.425 kb on - strand at 2887.853 kb on + strand, within BWI76_RS13840 at 2887.917 kb on - strand, within BWI76_RS13840 at 2888.086 kb on - strand, within BWI76_RS13840 at 2888.096 kb on - strand, within BWI76_RS13840 at 2888.096 kb on - strand, within BWI76_RS13840 at 2888.177 kb on + strand at 2888.177 kb on + strand at 2888.340 kb on - strand at 2888.441 kb on + strand, within BWI76_RS13845 at 2888.468 kb on + strand, within BWI76_RS13845 at 2888.608 kb on - strand, within BWI76_RS13845 at 2888.681 kb on + strand, within BWI76_RS13845 at 2888.820 kb on + strand, within BWI76_RS13845 at 2888.820 kb on + strand, within BWI76_RS13845
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 2,886,500 - BWI76_RS13830 0.82 -0.7 2,886,526 + BWI76_RS13830 0.83 +0.5 2,886,539 + BWI76_RS13830 0.84 -0.9 2,886,702 + -0.2 2,886,715 + +0.4 2,886,750 + -0.4 2,886,760 + +0.7 2,886,761 + +0.1 2,886,877 - +0.7 2,886,886 + +0.7 2,886,886 + -0.3 2,886,886 + +0.5 2,886,894 - +1.2 2,886,894 - -2.0 2,886,909 - +0.3 2,887,140 + -0.5 2,887,226 + +0.9 2,887,327 - +0.2 2,887,425 - -0.3 2,887,853 + BWI76_RS13840 0.57 -0.7 2,887,917 - BWI76_RS13840 0.64 -3.4 2,888,086 - BWI76_RS13840 0.84 -1.8 2,888,096 - BWI76_RS13840 0.85 -0.6 2,888,096 - BWI76_RS13840 0.85 -2.6 2,888,177 + -1.4 2,888,177 + +0.1 2,888,340 - +0.5 2,888,441 + BWI76_RS13845 0.12 -0.1 2,888,468 + BWI76_RS13845 0.15 -0.3 2,888,608 - BWI76_RS13845 0.30 +0.1 2,888,681 + BWI76_RS13845 0.38 -2.0 2,888,820 + BWI76_RS13845 0.54 -0.5 2,888,820 + BWI76_RS13845 0.54 +0.3
Or see this region's nucleotide sequence