Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00895

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00890 and BWI76_RS00895 overlap by 56 nucleotidesBWI76_RS00895 and BWI76_RS00900 overlap by 20 nucleotidesBWI76_RS00900 and BWI76_RS00905 are separated by 126 nucleotides BWI76_RS00890: BWI76_RS00890 - vitamin B12/cobalamin outer membrane transporter, at 183,449 to 185,317 _RS00890 BWI76_RS00895: BWI76_RS00895 - glutamate racemase, at 185,262 to 186,116 _RS00895 BWI76_RS00900: BWI76_RS00900 - hypothetical protein, at 186,097 to 186,364 _RS00900 BWI76_RS00905: BWI76_RS00905 - 16S ribosomal RNA, at 186,491 to 188,044 _RS00905 Position (kb) 185 186 187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 184.282 kb on + strand, within BWI76_RS00890at 184.290 kb on + strand, within BWI76_RS00890at 184.297 kb on + strand, within BWI76_RS00890at 184.334 kb on - strand, within BWI76_RS00890at 184.390 kb on + strand, within BWI76_RS00890at 184.445 kb on + strand, within BWI76_RS00890at 184.448 kb on - strand, within BWI76_RS00890at 184.448 kb on - strand, within BWI76_RS00890at 184.625 kb on + strand, within BWI76_RS00890at 184.680 kb on + strand, within BWI76_RS00890at 184.708 kb on - strand, within BWI76_RS00890at 184.779 kb on - strand, within BWI76_RS00890at 184.855 kb on + strand, within BWI76_RS00890at 184.855 kb on + strand, within BWI76_RS00890at 184.860 kb on + strand, within BWI76_RS00890at 184.938 kb on - strand, within BWI76_RS00890at 184.990 kb on + strand, within BWI76_RS00890at 185.061 kb on - strand, within BWI76_RS00890at 185.095 kb on + strand, within BWI76_RS00890at 185.156 kb on - strandat 185.169 kb on + strandat 185.258 kb on + strandat 186.174 kb on + strand, within BWI76_RS00900

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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184,282 + BWI76_RS00890 0.45 -0.5
184,290 + BWI76_RS00890 0.45 -1.1
184,297 + BWI76_RS00890 0.45 -2.5
184,334 - BWI76_RS00890 0.47 -2.9
184,390 + BWI76_RS00890 0.50 -2.0
184,445 + BWI76_RS00890 0.53 -1.6
184,448 - BWI76_RS00890 0.53 -0.9
184,448 - BWI76_RS00890 0.53 -0.3
184,625 + BWI76_RS00890 0.63 -1.5
184,680 + BWI76_RS00890 0.66 -2.3
184,708 - BWI76_RS00890 0.67 -2.5
184,779 - BWI76_RS00890 0.71 -1.4
184,855 + BWI76_RS00890 0.75 -1.8
184,855 + BWI76_RS00890 0.75 -0.5
184,860 + BWI76_RS00890 0.75 -2.6
184,938 - BWI76_RS00890 0.80 -1.9
184,990 + BWI76_RS00890 0.82 -3.1
185,061 - BWI76_RS00890 0.86 -0.3
185,095 + BWI76_RS00890 0.88 -1.2
185,156 - -0.4
185,169 + -4.1
185,258 + +0.4
186,174 + BWI76_RS00900 0.29 -0.0

Or see this region's nucleotide sequence