Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004550

Experiment: 2,3-dihydroxybenzoic and Ethanols

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004547 and ABIE53_004548 are separated by 21 nucleotidesABIE53_004548 and ABIE53_004549 are separated by 77 nucleotidesABIE53_004549 and ABIE53_004550 are separated by 4 nucleotidesABIE53_004550 and ABIE53_004551 overlap by 4 nucleotides ABIE53_004547: ABIE53_004547 - 3-phenylpropionate/cinnamic acid dioxygenase small subunit, at 736,482 to 736,982 _004547 ABIE53_004548: ABIE53_004548 - 4-oxalocrotonate tautomerase, at 737,004 to 737,411 _004548 ABIE53_004549: ABIE53_004549 - hypothetical protein, at 737,489 to 737,845 _004549 ABIE53_004550: ABIE53_004550 - hypothetical protein, at 737,850 to 738,365 _004550 ABIE53_004551: ABIE53_004551 - amidase, at 738,362 to 739,498 _004551 Position (kb) 737 738 739Strain fitness (log2 ratio) -2 -1 0 1at 737.056 kb on - strand, within ABIE53_004548at 737.161 kb on + strand, within ABIE53_004548at 737.162 kb on - strand, within ABIE53_004548at 737.485 kb on - strandat 737.559 kb on + strand, within ABIE53_004549at 737.559 kb on + strand, within ABIE53_004549at 737.559 kb on + strand, within ABIE53_004549at 737.559 kb on + strand, within ABIE53_004549at 737.559 kb on + strand, within ABIE53_004549at 737.559 kb on + strand, within ABIE53_004549at 737.560 kb on - strand, within ABIE53_004549at 737.560 kb on - strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.681 kb on + strand, within ABIE53_004549at 737.682 kb on - strand, within ABIE53_004549at 737.682 kb on - strand, within ABIE53_004549at 737.796 kb on + strand, within ABIE53_004549at 737.839 kb on + strandat 737.839 kb on + strandat 737.841 kb on + strandat 737.841 kb on + strandat 737.841 kb on + strandat 737.842 kb on - strandat 737.842 kb on - strandat 737.842 kb on - strandat 737.934 kb on + strand, within ABIE53_004550at 737.934 kb on + strand, within ABIE53_004550at 737.934 kb on + strand, within ABIE53_004550at 737.934 kb on + strand, within ABIE53_004550at 737.992 kb on + strand, within ABIE53_004550at 738.000 kb on + strand, within ABIE53_004550at 738.000 kb on + strand, within ABIE53_004550at 738.000 kb on + strand, within ABIE53_004550at 738.094 kb on - strand, within ABIE53_004550at 738.094 kb on - strand, within ABIE53_004550at 738.149 kb on + strand, within ABIE53_004550at 738.157 kb on + strand, within ABIE53_004550at 738.168 kb on - strand, within ABIE53_004550at 738.208 kb on - strand, within ABIE53_004550at 738.208 kb on - strand, within ABIE53_004550at 738.281 kb on + strand, within ABIE53_004550at 738.941 kb on - strand, within ABIE53_004551at 739.202 kb on - strand, within ABIE53_004551at 739.259 kb on - strand, within ABIE53_004551

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Per-strain Table

Position Strand Gene LocusTag Fraction 2,3-dihydroxybenzoic and Ethanols
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737,056 - ABIE53_004548 0.13 +1.7
737,161 + ABIE53_004548 0.38 +1.3
737,162 - ABIE53_004548 0.39 +0.3
737,485 - -1.5
737,559 + ABIE53_004549 0.20 +0.5
737,559 + ABIE53_004549 0.20 -0.5
737,559 + ABIE53_004549 0.20 -0.6
737,559 + ABIE53_004549 0.20 -0.6
737,559 + ABIE53_004549 0.20 -1.0
737,559 + ABIE53_004549 0.20 +0.1
737,560 - ABIE53_004549 0.20 -1.9
737,560 - ABIE53_004549 0.20 -0.6
737,681 + ABIE53_004549 0.54 -1.4
737,681 + ABIE53_004549 0.54 +1.5
737,681 + ABIE53_004549 0.54 -0.4
737,681 + ABIE53_004549 0.54 +0.5
737,681 + ABIE53_004549 0.54 +0.5
737,681 + ABIE53_004549 0.54 -0.4
737,682 - ABIE53_004549 0.54 +0.5
737,682 - ABIE53_004549 0.54 -1.4
737,796 + ABIE53_004549 0.86 -0.4
737,839 + -0.4
737,839 + +0.2
737,841 + -0.3
737,841 + +1.0
737,841 + +0.2
737,842 - -0.3
737,842 - -0.2
737,842 - +0.0
737,934 + ABIE53_004550 0.16 -1.5
737,934 + ABIE53_004550 0.16 +0.7
737,934 + ABIE53_004550 0.16 -1.0
737,934 + ABIE53_004550 0.16 +1.2
737,992 + ABIE53_004550 0.28 +0.7
738,000 + ABIE53_004550 0.29 +0.9
738,000 + ABIE53_004550 0.29 -1.6
738,000 + ABIE53_004550 0.29 -0.6
738,094 - ABIE53_004550 0.47 +0.7
738,094 - ABIE53_004550 0.47 -0.4
738,149 + ABIE53_004550 0.58 +0.4
738,157 + ABIE53_004550 0.59 +1.5
738,168 - ABIE53_004550 0.62 +0.9
738,208 - ABIE53_004550 0.69 +0.2
738,208 - ABIE53_004550 0.69 -0.1
738,281 + ABIE53_004550 0.84 -0.4
738,941 - ABIE53_004551 0.51 +0.9
739,202 - ABIE53_004551 0.74 -0.8
739,259 - ABIE53_004551 0.79 -1.7

Or see this region's nucleotide sequence