Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4189 and Dshi_4190 are separated by 163 nucleotides Dshi_4190 and Dshi_4191 are separated by 78 nucleotides
Dshi_4189: Dshi_4189 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 34,761 to 35,777
_4189
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292
_4191
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -1
0
1 at 34.975 kb on - strand, within Dshi_4189 at 35.378 kb on - strand, within Dshi_4189 at 35.397 kb on - strand, within Dshi_4189 at 35.631 kb on + strand, within Dshi_4189 at 35.743 kb on - strand at 35.845 kb on + strand at 35.893 kb on + strand at 36.013 kb on - strand at 36.378 kb on - strand, within Dshi_4190 at 37.013 kb on - strand, within Dshi_4190 at 37.115 kb on - strand at 37.157 kb on - strand at 37.218 kb on + strand at 37.574 kb on + strand, within Dshi_4191 at 37.676 kb on + strand, within Dshi_4191 at 37.782 kb on - strand, within Dshi_4191 at 37.898 kb on + strand, within Dshi_4191 at 38.008 kb on + strand, within Dshi_4191 at 38.041 kb on - strand, within Dshi_4191 at 38.059 kb on - strand, within Dshi_4191 at 38.066 kb on + strand, within Dshi_4191
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 34,975 - Dshi_4189 0.21 +0.5 35,378 - Dshi_4189 0.61 -0.2 35,397 - Dshi_4189 0.63 -0.1 35,631 + Dshi_4189 0.86 -0.9 35,743 - -0.3 35,845 + -0.1 35,893 + -0.1 36,013 - -0.1 36,378 - Dshi_4190 0.34 -1.5 37,013 - Dshi_4190 0.84 -1.3 37,115 - +0.7 37,157 - +0.5 37,218 + -0.7 37,574 + Dshi_4191 0.28 +1.1 37,676 + Dshi_4191 0.38 -1.3 37,782 - Dshi_4191 0.49 -0.8 37,898 + Dshi_4191 0.60 -0.3 38,008 + Dshi_4191 0.71 -1.4 38,041 - Dshi_4191 0.75 -1.0 38,059 - Dshi_4191 0.77 +0.8 38,066 + Dshi_4191 0.77 -0.3
Or see this region's nucleotide sequence