Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3036 and Dshi_3037 overlap by 4 nucleotides Dshi_3037 and Dshi_3038 are separated by 116 nucleotides Dshi_3038 and Dshi_3039 are separated by 3 nucleotides
Dshi_3036: Dshi_3036 - acriflavin resistance protein (RefSeq), at 3,203,392 to 3,206,619
_3036
Dshi_3037: Dshi_3037 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,206,616 to 3,207,824
_3037
Dshi_3038: Dshi_3038 - transcriptional regulator, TetR family (RefSeq), at 3,207,941 to 3,208,633
_3038
Dshi_3039: Dshi_3039 - BLUF domain protein (RefSeq), at 3,208,637 to 3,209,044
_3039
Position (kb)
3206
3207
3208 Strain fitness (log2 ratio)
-2
-1
0
1 at 3205.671 kb on + strand, within Dshi_3036 at 3205.677 kb on + strand, within Dshi_3036 at 3205.878 kb on - strand, within Dshi_3036 at 3205.906 kb on + strand, within Dshi_3036 at 3205.921 kb on + strand, within Dshi_3036 at 3206.031 kb on + strand, within Dshi_3036 at 3206.052 kb on - strand, within Dshi_3036 at 3206.053 kb on - strand, within Dshi_3036 at 3206.218 kb on - strand, within Dshi_3036 at 3206.252 kb on - strand, within Dshi_3036 at 3206.295 kb on + strand at 3206.357 kb on - strand at 3206.390 kb on - strand at 3206.444 kb on - strand at 3206.465 kb on - strand at 3206.564 kb on - strand at 3206.594 kb on - strand at 3206.608 kb on - strand at 3206.617 kb on + strand at 3206.667 kb on + strand at 3206.722 kb on + strand at 3206.806 kb on - strand, within Dshi_3037 at 3206.840 kb on + strand, within Dshi_3037 at 3206.860 kb on - strand, within Dshi_3037 at 3206.873 kb on + strand, within Dshi_3037 at 3206.937 kb on - strand, within Dshi_3037 at 3207.027 kb on - strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.108 kb on - strand, within Dshi_3037 at 3207.108 kb on - strand, within Dshi_3037 at 3207.172 kb on + strand, within Dshi_3037 at 3207.180 kb on - strand, within Dshi_3037 at 3207.194 kb on + strand, within Dshi_3037 at 3207.202 kb on - strand, within Dshi_3037 at 3207.226 kb on + strand, within Dshi_3037 at 3207.273 kb on + strand, within Dshi_3037 at 3207.281 kb on - strand, within Dshi_3037 at 3207.405 kb on - strand, within Dshi_3037 at 3207.405 kb on - strand, within Dshi_3037 at 3207.451 kb on - strand, within Dshi_3037 at 3207.465 kb on + strand, within Dshi_3037 at 3207.480 kb on + strand, within Dshi_3037 at 3207.784 kb on + strand at 3207.804 kb on - strand at 3207.999 kb on - strand at 3208.083 kb on + strand, within Dshi_3038 at 3208.167 kb on - strand, within Dshi_3038 at 3208.198 kb on + strand, within Dshi_3038 at 3208.206 kb on - strand, within Dshi_3038 at 3208.227 kb on + strand, within Dshi_3038 at 3208.271 kb on - strand, within Dshi_3038 at 3208.401 kb on + strand, within Dshi_3038 at 3208.433 kb on + strand, within Dshi_3038 at 3208.443 kb on + strand, within Dshi_3038 at 3208.456 kb on - strand, within Dshi_3038 at 3208.526 kb on - strand, within Dshi_3038 at 3208.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 3,205,671 + Dshi_3036 0.71 -0.4 3,205,677 + Dshi_3036 0.71 +0.3 3,205,878 - Dshi_3036 0.77 +0.2 3,205,906 + Dshi_3036 0.78 +0.4 3,205,921 + Dshi_3036 0.78 +0.5 3,206,031 + Dshi_3036 0.82 +1.3 3,206,052 - Dshi_3036 0.82 +0.3 3,206,053 - Dshi_3036 0.82 +0.2 3,206,218 - Dshi_3036 0.88 -0.3 3,206,252 - Dshi_3036 0.89 +0.3 3,206,295 + +1.3 3,206,357 - -0.1 3,206,390 - +0.6 3,206,444 - -2.3 3,206,465 - +0.7 3,206,564 - +0.3 3,206,594 - -0.8 3,206,608 - +0.8 3,206,617 + +0.1 3,206,667 + +0.0 3,206,722 + -0.0 3,206,806 - Dshi_3037 0.16 +0.1 3,206,840 + Dshi_3037 0.19 +0.5 3,206,860 - Dshi_3037 0.20 -0.3 3,206,873 + Dshi_3037 0.21 +0.8 3,206,937 - Dshi_3037 0.27 -0.8 3,207,027 - Dshi_3037 0.34 -0.4 3,207,100 + Dshi_3037 0.40 +0.0 3,207,100 + Dshi_3037 0.40 -0.0 3,207,100 + Dshi_3037 0.40 +0.6 3,207,108 - Dshi_3037 0.41 -1.1 3,207,108 - Dshi_3037 0.41 -0.6 3,207,172 + Dshi_3037 0.46 +1.4 3,207,180 - Dshi_3037 0.47 +0.4 3,207,194 + Dshi_3037 0.48 +0.4 3,207,202 - Dshi_3037 0.48 -0.2 3,207,226 + Dshi_3037 0.50 +0.5 3,207,273 + Dshi_3037 0.54 -0.6 3,207,281 - Dshi_3037 0.55 -1.1 3,207,405 - Dshi_3037 0.65 -0.0 3,207,405 - Dshi_3037 0.65 -0.4 3,207,451 - Dshi_3037 0.69 -0.3 3,207,465 + Dshi_3037 0.70 -0.9 3,207,480 + Dshi_3037 0.71 -0.6 3,207,784 + +0.6 3,207,804 - -0.9 3,207,999 - -0.1 3,208,083 + Dshi_3038 0.20 +0.4 3,208,167 - Dshi_3038 0.33 -0.6 3,208,198 + Dshi_3038 0.37 +0.4 3,208,206 - Dshi_3038 0.38 -0.3 3,208,227 + Dshi_3038 0.41 -0.5 3,208,271 - Dshi_3038 0.48 -0.6 3,208,401 + Dshi_3038 0.66 +0.2 3,208,433 + Dshi_3038 0.71 +0.3 3,208,443 + Dshi_3038 0.72 -0.5 3,208,456 - Dshi_3038 0.74 +0.5 3,208,526 - Dshi_3038 0.84 -0.1 3,208,627 + +0.1
Or see this region's nucleotide sequence