Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2142

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2140 and Dshi_2141 are separated by 86 nucleotidesDshi_2141 and Dshi_2142 are separated by 109 nucleotidesDshi_2142 and Dshi_2143 are separated by 84 nucleotides Dshi_2140: Dshi_2140 - sodium/hydrogen exchanger (RefSeq), at 2,269,849 to 2,271,162 _2140 Dshi_2141: Dshi_2141 - hypothetical protein (RefSeq), at 2,271,249 to 2,271,968 _2141 Dshi_2142: Dshi_2142 - ferric uptake regulator, Fur family (RefSeq), at 2,272,078 to 2,272,491 _2142 Dshi_2143: Dshi_2143 - Pirin domain protein (RefSeq), at 2,272,576 to 2,273,487 _2143 Position (kb) 2272 2273Strain fitness (log2 ratio) -1 0 1at 2271.081 kb on + strandat 2271.163 kb on + strandat 2271.324 kb on + strand, within Dshi_2141at 2271.502 kb on + strand, within Dshi_2141at 2271.590 kb on - strand, within Dshi_2141at 2271.766 kb on - strand, within Dshi_2141at 2271.821 kb on + strand, within Dshi_2141at 2271.821 kb on + strand, within Dshi_2141at 2272.250 kb on + strand, within Dshi_2142at 2272.252 kb on + strand, within Dshi_2142at 2272.314 kb on + strand, within Dshi_2142at 2272.509 kb on - strandat 2272.647 kb on - strandat 2272.728 kb on - strand, within Dshi_2143at 2272.738 kb on + strand, within Dshi_2143at 2272.792 kb on + strand, within Dshi_2143at 2272.959 kb on + strand, within Dshi_2143at 2273.309 kb on - strand, within Dshi_2143at 2273.433 kb on + strandat 2273.469 kb on + strandat 2273.469 kb on + strandat 2273.469 kb on + strandat 2273.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
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2,271,081 + +0.2
2,271,163 + +0.1
2,271,324 + Dshi_2141 0.10 +0.6
2,271,502 + Dshi_2141 0.35 +0.1
2,271,590 - Dshi_2141 0.47 -0.2
2,271,766 - Dshi_2141 0.72 +0.5
2,271,821 + Dshi_2141 0.79 +0.6
2,271,821 + Dshi_2141 0.79 -0.6
2,272,250 + Dshi_2142 0.42 -0.3
2,272,252 + Dshi_2142 0.42 -1.7
2,272,314 + Dshi_2142 0.57 -0.3
2,272,509 - -0.2
2,272,647 - -0.6
2,272,728 - Dshi_2143 0.17 +0.3
2,272,738 + Dshi_2143 0.18 +0.4
2,272,792 + Dshi_2143 0.24 +0.4
2,272,959 + Dshi_2143 0.42 +0.5
2,273,309 - Dshi_2143 0.80 +0.2
2,273,433 + +0.1
2,273,469 + +0.3
2,273,469 + +0.2
2,273,469 + -0.2
2,273,477 - -0.3

Or see this region's nucleotide sequence