Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1840
Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Dimethyl Sulfoxide 5 vol% |
---|---|---|---|---|---|
remove | |||||
1,921,625 | - | -0.4 | |||
1,921,637 | + | -0.8 | |||
1,921,644 | - | -0.2 | |||
1,921,647 | + | -0.7 | |||
1,921,684 | + | +0.2 | |||
1,921,692 | - | -2.8 | |||
1,921,702 | - | -0.7 | |||
1,921,779 | + | -0.2 | |||
1,921,814 | + | +0.3 | |||
1,921,898 | + | Dshi_1840 | 0.16 | -0.7 | |
1,921,996 | + | Dshi_1840 | 0.24 | +0.0 | |
1,922,014 | + | Dshi_1840 | 0.26 | -0.8 | |
1,922,057 | + | Dshi_1840 | 0.29 | -0.7 | |
1,922,075 | - | Dshi_1840 | 0.31 | +0.1 | |
1,922,333 | - | Dshi_1840 | 0.52 | +0.0 | |
1,922,455 | - | Dshi_1840 | 0.62 | +0.4 | |
1,922,505 | + | Dshi_1840 | 0.66 | -0.9 | |
1,922,583 | + | Dshi_1840 | 0.73 | +0.4 | |
1,922,700 | - | Dshi_1840 | 0.82 | -0.1 | |
1,922,739 | - | Dshi_1840 | 0.85 | -0.5 | |
1,922,753 | - | Dshi_1840 | 0.87 | +0.1 | |
1,922,793 | + | Dshi_1840 | 0.90 | -1.2 | |
1,922,869 | + | -1.1 | |||
1,922,921 | + | +0.3 | |||
1,922,921 | + | +0.5 | |||
1,923,081 | - | +0.3 | |||
1,923,174 | - | Dshi_1841 | 0.16 | -0.0 | |
1,923,174 | - | Dshi_1841 | 0.16 | +0.6 | |
1,923,191 | - | Dshi_1841 | 0.20 | +0.1 | |
1,923,371 | + | Dshi_1841 | 0.64 | +0.6 | |
1,923,394 | - | Dshi_1841 | 0.70 | -0.1 | |
1,923,451 | - | Dshi_1841 | 0.83 | -0.3 | |
1,923,452 | + | Dshi_1841 | 0.84 | -0.6 | |
1,923,510 | + | -0.5 | |||
1,923,518 | - | +0.8 |
Or see this region's nucleotide sequence