Experiment: m.b. Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0687 and Dshi_0688 are separated by 141 nucleotides Dshi_0688 and Dshi_0689 overlap by 4 nucleotides Dshi_0689 and Dshi_0690 overlap by 4 nucleotides
Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332
_0687
Dshi_0688: Dshi_0688 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 693,474 to 694,838
_0688
Dshi_0689: Dshi_0689 - isocitrate lyase family protein (RefSeq), at 694,835 to 695,713
_0689
Dshi_0690: Dshi_0690 - isochorismatase hydrolase (RefSeq), at 695,710 to 696,312
_0690
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1
2 at 692.519 kb on + strand at 692.540 kb on + strand at 692.592 kb on + strand at 692.613 kb on - strand at 692.637 kb on + strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.805 kb on + strand, within Dshi_0687 at 692.823 kb on + strand, within Dshi_0687 at 692.956 kb on - strand, within Dshi_0687 at 693.112 kb on + strand, within Dshi_0687 at 693.203 kb on + strand, within Dshi_0687 at 693.232 kb on - strand, within Dshi_0687 at 693.368 kb on - strand at 693.393 kb on + strand at 693.440 kb on + strand at 693.477 kb on + strand at 693.511 kb on - strand at 693.654 kb on - strand, within Dshi_0688 at 693.726 kb on - strand, within Dshi_0688 at 693.761 kb on - strand, within Dshi_0688 at 693.780 kb on - strand at 693.816 kb on + strand, within Dshi_0688 at 693.860 kb on - strand, within Dshi_0688 at 693.969 kb on + strand, within Dshi_0688 at 694.060 kb on - strand, within Dshi_0688 at 694.090 kb on - strand, within Dshi_0688 at 694.112 kb on + strand, within Dshi_0688 at 694.121 kb on + strand, within Dshi_0688 at 694.190 kb on - strand, within Dshi_0688 at 694.241 kb on + strand, within Dshi_0688 at 694.284 kb on - strand, within Dshi_0688 at 694.293 kb on + strand, within Dshi_0688 at 694.388 kb on - strand, within Dshi_0688 at 694.536 kb on + strand, within Dshi_0688 at 694.576 kb on + strand, within Dshi_0688 at 694.650 kb on - strand, within Dshi_0688 at 694.697 kb on - strand, within Dshi_0688 at 694.715 kb on - strand at 694.947 kb on - strand at 694.958 kb on - strand, within Dshi_0689 at 694.983 kb on + strand, within Dshi_0689 at 694.991 kb on - strand, within Dshi_0689 at 694.991 kb on - strand, within Dshi_0689 at 695.026 kb on - strand, within Dshi_0689 at 695.034 kb on - strand, within Dshi_0689 at 695.120 kb on - strand, within Dshi_0689 at 695.158 kb on - strand, within Dshi_0689 at 695.168 kb on - strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.228 kb on - strand at 695.232 kb on + strand, within Dshi_0689 at 695.261 kb on + strand, within Dshi_0689 at 695.323 kb on + strand, within Dshi_0689 at 695.367 kb on + strand, within Dshi_0689 at 695.375 kb on - strand, within Dshi_0689 at 695.375 kb on - strand, within Dshi_0689 at 695.377 kb on + strand, within Dshi_0689 at 695.435 kb on - strand, within Dshi_0689 at 695.458 kb on - strand, within Dshi_0689 at 695.492 kb on - strand, within Dshi_0689 at 695.545 kb on - strand, within Dshi_0689 at 695.566 kb on + strand, within Dshi_0689 at 695.568 kb on + strand, within Dshi_0689 at 695.593 kb on + strand, within Dshi_0689 at 695.767 kb on + strand at 695.775 kb on - strand, within Dshi_0690 at 695.775 kb on - strand, within Dshi_0690 at 695.793 kb on + strand, within Dshi_0690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol% remove 692,519 + -1.0 692,540 + -0.2 692,592 + -1.1 692,613 - -0.3 692,637 + Dshi_0687 0.10 -0.4 692,684 - Dshi_0687 0.16 -0.1 692,684 - Dshi_0687 0.16 -0.5 692,805 + Dshi_0687 0.32 +0.5 692,823 + Dshi_0687 0.34 +0.4 692,956 - Dshi_0687 0.51 -0.7 693,112 + Dshi_0687 0.72 +0.3 693,203 + Dshi_0687 0.83 -0.2 693,232 - Dshi_0687 0.87 -0.2 693,368 - -1.3 693,393 + -0.1 693,440 + -0.1 693,477 + +0.7 693,511 - -0.6 693,654 - Dshi_0688 0.13 -0.3 693,726 - Dshi_0688 0.18 -0.4 693,761 - Dshi_0688 0.21 +1.3 693,780 - +2.4 693,816 + Dshi_0688 0.25 -0.3 693,860 - Dshi_0688 0.28 -1.1 693,969 + Dshi_0688 0.36 -0.5 694,060 - Dshi_0688 0.43 -0.3 694,090 - Dshi_0688 0.45 -1.4 694,112 + Dshi_0688 0.47 -0.3 694,121 + Dshi_0688 0.47 +0.2 694,190 - Dshi_0688 0.52 -0.7 694,241 + Dshi_0688 0.56 +0.3 694,284 - Dshi_0688 0.59 +0.2 694,293 + Dshi_0688 0.60 -0.5 694,388 - Dshi_0688 0.67 -0.1 694,536 + Dshi_0688 0.78 -0.4 694,576 + Dshi_0688 0.81 +0.1 694,650 - Dshi_0688 0.86 -0.1 694,697 - Dshi_0688 0.90 -0.2 694,715 - +0.1 694,947 - -0.7 694,958 - Dshi_0689 0.14 +0.3 694,983 + Dshi_0689 0.17 -0.1 694,991 - Dshi_0689 0.18 -0.1 694,991 - Dshi_0689 0.18 -0.6 695,026 - Dshi_0689 0.22 -0.1 695,034 - Dshi_0689 0.23 +0.6 695,120 - Dshi_0689 0.32 -0.2 695,158 - Dshi_0689 0.37 +0.1 695,168 - Dshi_0689 0.38 +0.9 695,220 + Dshi_0689 0.44 +0.4 695,220 + Dshi_0689 0.44 -0.5 695,220 + Dshi_0689 0.44 -0.1 695,228 - -1.5 695,232 + Dshi_0689 0.45 -0.5 695,261 + Dshi_0689 0.48 +0.6 695,323 + Dshi_0689 0.56 -0.9 695,367 + Dshi_0689 0.61 +0.1 695,375 - Dshi_0689 0.61 -0.4 695,375 - Dshi_0689 0.61 -0.5 695,377 + Dshi_0689 0.62 +0.5 695,435 - Dshi_0689 0.68 +0.9 695,458 - Dshi_0689 0.71 +0.9 695,492 - Dshi_0689 0.75 -0.5 695,545 - Dshi_0689 0.81 -0.1 695,566 + Dshi_0689 0.83 +0.3 695,568 + Dshi_0689 0.83 -0.5 695,593 + Dshi_0689 0.86 +2.1 695,767 + -0.9 695,775 - Dshi_0690 0.11 +1.3 695,775 - Dshi_0690 0.11 -0.2 695,793 + Dshi_0690 0.14 -0.1
Or see this region's nucleotide sequence