Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1940

Experiment: MoYLS4 with FCCP 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1939 and glpA are separated by 8 nucleotidesglpA and DVU1941 are separated by 35 nucleotides DVU1939: DVU1939 - anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative (TIGR), at 2,011,221 to 2,012,504 DVU1939 DVU1940: glpA - anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative (TIGR), at 2,012,513 to 2,014,063 glpA DVU1941: DVU1941 - HAD-superfamily hydrolase, subfamily IIA (TIGR), at 2,014,099 to 2,014,866 DVU1941 Position (kb) 2012 2013 2014 2015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2011.535 kb on + strand, within DVU1939at 2011.565 kb on + strand, within DVU1939at 2011.600 kb on - strand, within DVU1939at 2011.674 kb on - strand, within DVU1939at 2011.674 kb on - strand, within DVU1939at 2011.987 kb on + strand, within DVU1939at 2012.150 kb on + strand, within DVU1939at 2012.189 kb on + strand, within DVU1939at 2012.189 kb on - strand, within DVU1939at 2012.191 kb on + strand, within DVU1939at 2012.225 kb on + strand, within DVU1939at 2012.265 kb on - strand, within DVU1939at 2012.523 kb on - strandat 2012.524 kb on - strandat 2012.693 kb on - strand, within glpAat 2012.724 kb on + strand, within glpAat 2012.736 kb on + strand, within glpAat 2012.842 kb on + strand, within glpAat 2012.864 kb on - strand, within glpAat 2012.971 kb on + strand, within glpAat 2013.158 kb on + strand, within glpAat 2013.196 kb on - strand, within glpAat 2013.199 kb on - strand, within glpAat 2013.206 kb on - strand, within glpAat 2013.279 kb on + strand, within glpAat 2013.279 kb on + strand, within glpAat 2013.392 kb on - strand, within glpAat 2013.392 kb on - strand, within glpAat 2013.416 kb on + strand, within glpAat 2013.451 kb on + strand, within glpAat 2013.518 kb on - strand, within glpAat 2013.656 kb on - strand, within glpAat 2013.820 kb on + strand, within glpAat 2013.830 kb on - strand, within glpAat 2013.864 kb on + strand, within glpAat 2013.872 kb on - strand, within glpAat 2013.872 kb on - strand, within glpAat 2013.872 kb on - strand, within glpAat 2013.907 kb on + strand, within glpAat 2013.917 kb on + strandat 2013.917 kb on - strandat 2013.925 kb on - strandat 2013.997 kb on + strandat 2014.022 kb on - strandat 2014.070 kb on + strandat 2014.078 kb on - strandat 2014.197 kb on - strand, within DVU1941at 2014.229 kb on + strand, within DVU1941at 2014.229 kb on + strand, within DVU1941at 2014.229 kb on + strand, within DVU1941at 2014.237 kb on - strand, within DVU1941at 2014.237 kb on - strand, within DVU1941at 2014.265 kb on + strand, within DVU1941at 2014.273 kb on - strand, within DVU1941at 2014.309 kb on - strand, within DVU1941at 2014.309 kb on - strand, within DVU1941at 2014.509 kb on - strand, within DVU1941at 2014.595 kb on + strand, within DVU1941at 2014.603 kb on - strand, within DVU1941at 2014.828 kb on - strandat 2014.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM
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2,011,535 + DVU1939 0.24 -2.2
2,011,565 + DVU1939 0.27 -1.7
2,011,600 - DVU1939 0.30 -0.2
2,011,674 - DVU1939 0.35 -1.8
2,011,674 - DVU1939 0.35 -1.4
2,011,987 + DVU1939 0.60 -2.2
2,012,150 + DVU1939 0.72 -0.2
2,012,189 + DVU1939 0.75 -1.0
2,012,189 - DVU1939 0.75 -1.7
2,012,191 + DVU1939 0.76 -1.2
2,012,225 + DVU1939 0.78 +1.8
2,012,265 - DVU1939 0.81 -1.8
2,012,523 - -0.4
2,012,524 - -0.7
2,012,693 - glpA DVU1940 0.12 -1.0
2,012,724 + glpA DVU1940 0.14 -1.6
2,012,736 + glpA DVU1940 0.14 -2.8
2,012,842 + glpA DVU1940 0.21 -0.2
2,012,864 - glpA DVU1940 0.23 -1.2
2,012,971 + glpA DVU1940 0.30 -1.7
2,013,158 + glpA DVU1940 0.42 -0.2
2,013,196 - glpA DVU1940 0.44 +0.1
2,013,199 - glpA DVU1940 0.44 -1.7
2,013,206 - glpA DVU1940 0.45 -1.2
2,013,279 + glpA DVU1940 0.49 +0.8
2,013,279 + glpA DVU1940 0.49 +0.8
2,013,392 - glpA DVU1940 0.57 -1.3
2,013,392 - glpA DVU1940 0.57 -1.5
2,013,416 + glpA DVU1940 0.58 -2.4
2,013,451 + glpA DVU1940 0.60 +0.0
2,013,518 - glpA DVU1940 0.65 -0.8
2,013,656 - glpA DVU1940 0.74 -0.7
2,013,820 + glpA DVU1940 0.84 -2.2
2,013,830 - glpA DVU1940 0.85 -0.5
2,013,864 + glpA DVU1940 0.87 -0.3
2,013,872 - glpA DVU1940 0.88 -1.5
2,013,872 - glpA DVU1940 0.88 -1.5
2,013,872 - glpA DVU1940 0.88 +0.8
2,013,907 + glpA DVU1940 0.90 -1.7
2,013,917 + -1.2
2,013,917 - -0.9
2,013,925 - -2.0
2,013,997 + -1.2
2,014,022 - +0.3
2,014,070 + -0.4
2,014,078 - -0.2
2,014,197 - DVU1941 0.13 +1.8
2,014,229 + DVU1941 0.17 +0.7
2,014,229 + DVU1941 0.17 +0.1
2,014,229 + DVU1941 0.17 -0.6
2,014,237 - DVU1941 0.18 -0.2
2,014,237 - DVU1941 0.18 +0.3
2,014,265 + DVU1941 0.22 -0.2
2,014,273 - DVU1941 0.23 -1.2
2,014,309 - DVU1941 0.27 +1.8
2,014,309 - DVU1941 0.27 +0.4
2,014,509 - DVU1941 0.53 -0.5
2,014,595 + DVU1941 0.65 -0.5
2,014,603 - DVU1941 0.66 -0.3
2,014,828 - -0.5
2,014,914 - +0.3

Or see this region's nucleotide sequence