Experiment: MoYLS4 with FCCP 10uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0888 and DVU0889 are separated by 95 nucleotides DVU0889 and hom overlap by 4 nucleotides
DVU0888: DVU0888 - response regulator (TIGR), at 978,190 to 979,902
DVU0888
DVU0889: DVU0889 - phosphonopyruvate decarboxylase-related protein (TIGR), at 979,998 to 981,137
DVU0889
DVU0890: hom - homoserine dehydrogenase (TIGR), at 981,134 to 982,408
hom
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 979.046 kb on + strand, within DVU0888 at 979.101 kb on + strand, within DVU0888 at 979.141 kb on - strand, within DVU0888 at 979.146 kb on + strand, within DVU0888 at 979.154 kb on - strand, within DVU0888 at 979.311 kb on + strand, within DVU0888 at 979.378 kb on - strand, within DVU0888 at 979.411 kb on - strand, within DVU0888 at 979.411 kb on - strand, within DVU0888 at 979.594 kb on - strand, within DVU0888 at 979.773 kb on - strand at 979.835 kb on - strand at 979.905 kb on - strand at 979.905 kb on - strand at 980.024 kb on - strand at 980.057 kb on + strand at 980.101 kb on - strand at 980.145 kb on - strand, within DVU0889 at 980.179 kb on + strand, within DVU0889 at 980.202 kb on - strand, within DVU0889 at 980.299 kb on - strand, within DVU0889 at 980.330 kb on - strand, within DVU0889 at 980.340 kb on + strand, within DVU0889 at 980.348 kb on - strand, within DVU0889 at 980.429 kb on + strand, within DVU0889 at 980.431 kb on - strand, within DVU0889 at 980.437 kb on - strand, within DVU0889 at 980.463 kb on - strand, within DVU0889 at 980.512 kb on - strand, within DVU0889 at 980.524 kb on + strand, within DVU0889 at 980.524 kb on + strand, within DVU0889 at 980.577 kb on - strand, within DVU0889 at 980.592 kb on + strand, within DVU0889 at 980.613 kb on + strand, within DVU0889 at 980.705 kb on + strand, within DVU0889 at 980.731 kb on + strand, within DVU0889 at 980.731 kb on + strand, within DVU0889 at 980.738 kb on - strand, within DVU0889 at 980.739 kb on - strand, within DVU0889 at 980.915 kb on + strand, within DVU0889 at 980.980 kb on + strand, within DVU0889 at 980.980 kb on + strand, within DVU0889 at 980.988 kb on - strand, within DVU0889 at 981.019 kb on - strand, within DVU0889 at 981.039 kb on - strand at 981.362 kb on + strand, within hom at 982.009 kb on - strand, within hom
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 10uM remove 979,046 + DVU0888 0.50 +0.8 979,101 + DVU0888 0.53 -1.8 979,141 - DVU0888 0.56 +0.2 979,146 + DVU0888 0.56 -1.1 979,154 - DVU0888 0.56 -2.9 979,311 + DVU0888 0.65 -0.5 979,378 - DVU0888 0.69 -0.2 979,411 - DVU0888 0.71 -1.2 979,411 - DVU0888 0.71 -0.8 979,594 - DVU0888 0.82 -1.6 979,773 - -0.3 979,835 - -1.3 979,905 - -0.5 979,905 - +0.8 980,024 - +0.1 980,057 + -0.2 980,101 - -0.1 980,145 - DVU0889 0.13 +0.0 980,179 + DVU0889 0.16 -0.1 980,202 - DVU0889 0.18 +0.2 980,299 - DVU0889 0.26 +1.8 980,330 - DVU0889 0.29 -0.1 980,340 + DVU0889 0.30 -1.5 980,348 - DVU0889 0.31 +0.2 980,429 + DVU0889 0.38 +0.4 980,431 - DVU0889 0.38 +0.8 980,437 - DVU0889 0.39 -1.5 980,463 - DVU0889 0.41 -0.2 980,512 - DVU0889 0.45 +0.8 980,524 + DVU0889 0.46 +1.6 980,524 + DVU0889 0.46 +0.8 980,577 - DVU0889 0.51 -0.0 980,592 + DVU0889 0.52 -2.5 980,613 + DVU0889 0.54 +0.4 980,705 + DVU0889 0.62 -0.0 980,731 + DVU0889 0.64 +0.8 980,731 + DVU0889 0.64 +0.1 980,738 - DVU0889 0.65 -0.2 980,739 - DVU0889 0.65 +1.0 980,915 + DVU0889 0.80 +0.2 980,980 + DVU0889 0.86 +1.2 980,980 + DVU0889 0.86 +1.1 980,988 - DVU0889 0.87 +0.1 981,019 - DVU0889 0.90 -0.6 981,039 - +0.3 981,362 + hom DVU0890 0.18 -1.2 982,009 - hom DVU0890 0.69 +0.8
Or see this region's nucleotide sequence