Experiment: formate McAA thiamine dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01590 and MMP_RS01595 are separated by 57 nucleotides MMP_RS01595 and MMP_RS01600 are separated by 226 nucleotides MMP_RS01600 and MMP_RS01605 are separated by 975 nucleotides
MMP_RS01590: MMP_RS01590 - hypothetical protein, at 296,196 to 297,284
_RS01590
MMP_RS01595: MMP_RS01595 - translation initiation factor IF-2 subunit beta, at 297,342 to 297,758
_RS01595
MMP_RS01600: MMP_RS01600 - 50S ribosomal protein L15e, at 297,985 to 298,569
_RS01600
MMP_RS01605: MMP_RS01605 - hypothetical protein, at 299,545 to 299,793
_RS01605
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 297.045 kb on + strand at 297.315 kb on - strand at 297.319 kb on - strand at 297.843 kb on + strand at 297.874 kb on - strand at 297.891 kb on + strand at 298.001 kb on + strand at 298.141 kb on - strand, within MMP_RS01600 at 298.183 kb on + strand, within MMP_RS01600 at 298.380 kb on + strand, within MMP_RS01600 at 298.504 kb on - strand, within MMP_RS01600 at 298.616 kb on - strand at 298.656 kb on - strand at 298.660 kb on - strand at 298.661 kb on + strand at 298.668 kb on - strand at 298.679 kb on - strand at 298.855 kb on - strand at 298.921 kb on - strand at 298.928 kb on - strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.982 kb on + strand at 299.024 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.185 kb on - strand at 299.186 kb on + strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.189 kb on + strand at 299.190 kb on - strand at 299.194 kb on - strand at 299.195 kb on + strand at 299.199 kb on - strand at 299.199 kb on - strand at 299.201 kb on - strand at 299.206 kb on + strand at 299.209 kb on - strand at 299.252 kb on - strand at 299.287 kb on - strand at 299.290 kb on - strand at 299.294 kb on - strand at 299.303 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.399 kb on + strand at 299.423 kb on - strand at 299.423 kb on - strand at 299.424 kb on + strand at 299.456 kb on + strand at 299.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA thiamine dropout remove 297,045 + -3.2 297,315 - +0.3 297,319 - +0.2 297,843 + +0.8 297,874 - -2.2 297,891 + -3.1 298,001 + -2.2 298,141 - MMP_RS01600 0.27 -2.1 298,183 + MMP_RS01600 0.34 -2.7 298,380 + MMP_RS01600 0.68 -0.2 298,504 - MMP_RS01600 0.89 -0.4 298,616 - +0.3 298,656 - -0.1 298,660 - -0.7 298,661 + -0.7 298,668 - +0.5 298,679 - -0.1 298,855 - +0.5 298,921 - -0.3 298,928 - -0.3 298,938 + -0.2 298,938 + -0.4 298,938 + -0.7 298,938 + -0.2 298,982 + +0.2 299,024 - +0.2 299,061 - -0.3 299,061 - +0.2 299,061 - +0.0 299,185 - -0.5 299,186 + +0.6 299,188 - -0.7 299,188 - +0.4 299,188 - -0.2 299,188 - +0.3 299,189 + -0.1 299,190 - -0.1 299,194 - +0.3 299,195 + +0.5 299,199 - +0.5 299,199 - +0.1 299,201 - +0.8 299,206 + -0.2 299,209 - +0.3 299,252 - +0.1 299,287 - -0.1 299,290 - +0.0 299,294 - +0.9 299,303 + +1.3 299,309 + +0.1 299,309 + +0.7 299,399 + -0.1 299,423 - -0.3 299,423 - -0.6 299,424 + -1.3 299,456 + +0.1 299,463 - +0.4
Or see this region's nucleotide sequence