Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06473 and H281DRAFT_06474 are separated by 331 nucleotides H281DRAFT_06474 and H281DRAFT_06475 are separated by 4 nucleotides H281DRAFT_06475 and H281DRAFT_06476 are separated by 78 nucleotides
H281DRAFT_06473: H281DRAFT_06473 - NTE family protein, at 10,048 to 11,001
_06473
H281DRAFT_06474: H281DRAFT_06474 - amino acid ABC transporter membrane protein 1, PAAT family, at 11,333 to 12,022
_06474
H281DRAFT_06475: H281DRAFT_06475 - amino acid ABC transporter membrane protein 2, PAAT family, at 12,027 to 12,740
_06475
H281DRAFT_06476: H281DRAFT_06476 - amino acid ABC transporter ATP-binding protein, PAAT family, at 12,819 to 13,610
_06476
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1 at 10.508 kb on + strand, within H281DRAFT_06473 at 10.961 kb on - strand at 10.961 kb on - strand at 10.962 kb on + strand at 10.962 kb on + strand at 10.963 kb on - strand at 11.033 kb on + strand at 11.303 kb on - strand at 11.341 kb on - strand at 11.341 kb on - strand at 11.343 kb on - strand at 11.546 kb on - strand, within H281DRAFT_06474 at 11.655 kb on - strand, within H281DRAFT_06474 at 12.241 kb on - strand, within H281DRAFT_06475 at 12.274 kb on - strand at 12.274 kb on - strand, within H281DRAFT_06475 at 12.274 kb on - strand, within H281DRAFT_06475 at 12.372 kb on + strand, within H281DRAFT_06475 at 12.373 kb on - strand, within H281DRAFT_06475 at 12.442 kb on - strand, within H281DRAFT_06475 at 12.446 kb on + strand, within H281DRAFT_06475 at 12.514 kb on - strand, within H281DRAFT_06475 at 12.518 kb on + strand at 12.615 kb on + strand, within H281DRAFT_06475 at 12.654 kb on + strand, within H281DRAFT_06475
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 10,508 + H281DRAFT_06473 0.48 -0.0 10,961 - -1.3 10,961 - -0.1 10,962 + -1.7 10,962 + +0.0 10,963 - +0.5 11,033 + -0.4 11,303 - +0.4 11,341 - +1.2 11,341 - -0.4 11,343 - +0.3 11,546 - H281DRAFT_06474 0.31 +1.5 11,655 - H281DRAFT_06474 0.47 -0.1 12,241 - H281DRAFT_06475 0.30 +0.6 12,274 - +0.0 12,274 - H281DRAFT_06475 0.35 +0.6 12,274 - H281DRAFT_06475 0.35 -0.1 12,372 + H281DRAFT_06475 0.48 -0.3 12,373 - H281DRAFT_06475 0.48 -0.0 12,442 - H281DRAFT_06475 0.58 +0.2 12,446 + H281DRAFT_06475 0.59 -0.4 12,514 - H281DRAFT_06475 0.68 -0.0 12,518 + -0.1 12,615 + H281DRAFT_06475 0.82 +1.0 12,654 + H281DRAFT_06475 0.88 +0.2
Or see this region's nucleotide sequence