Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06425

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06424 and H281DRAFT_06425 are separated by 729 nucleotidesH281DRAFT_06425 and H281DRAFT_06426 are separated by 333 nucleotides H281DRAFT_06424: H281DRAFT_06424 - transcriptional regulator, LysR family, at 24,399 to 25,376 _06424 H281DRAFT_06425: H281DRAFT_06425 - Predicted membrane protein, at 26,106 to 26,495 _06425 H281DRAFT_06426: H281DRAFT_06426 - ATP-dependent Lon protease, at 26,829 to 29,207 _06426 Position (kb) 26 27Strain fitness (log2 ratio) -1 0 1at 25.250 kb on - strand, within H281DRAFT_06424at 25.250 kb on - strand, within H281DRAFT_06424at 25.323 kb on - strandat 25.323 kb on - strandat 25.463 kb on + strandat 25.510 kb on - strandat 25.535 kb on - strandat 25.607 kb on - strandat 25.607 kb on - strandat 25.607 kb on - strandat 25.646 kb on - strandat 25.715 kb on - strandat 25.715 kb on - strandat 25.775 kb on - strandat 25.906 kb on + strandat 25.906 kb on + strandat 25.936 kb on - strandat 25.987 kb on - strandat 26.070 kb on + strandat 26.071 kb on - strandat 26.116 kb on - strandat 26.116 kb on - strandat 26.116 kb on - strandat 26.144 kb on + strandat 26.299 kb on + strand, within H281DRAFT_06425at 26.514 kb on + strandat 26.515 kb on - strandat 26.673 kb on + strandat 26.673 kb on + strandat 26.674 kb on - strandat 26.682 kb on - strandat 26.743 kb on - strandat 26.743 kb on - strandat 26.743 kb on - strandat 26.743 kb on - strandat 26.837 kb on + strandat 26.838 kb on - strandat 27.126 kb on - strand, within H281DRAFT_06426at 27.451 kb on - strand, within H281DRAFT_06426at 27.452 kb on + strand, within H281DRAFT_06426at 27.453 kb on - strand, within H281DRAFT_06426at 27.453 kb on - strand, within H281DRAFT_06426at 27.453 kb on - strand, within H281DRAFT_06426

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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25,250 - H281DRAFT_06424 0.87 -0.6
25,250 - H281DRAFT_06424 0.87 -0.5
25,323 - -0.2
25,323 - -0.5
25,463 + +0.2
25,510 - +0.8
25,535 - +0.5
25,607 - -1.6
25,607 - +0.2
25,607 - +0.8
25,646 - -0.1
25,715 - +1.1
25,715 - -0.2
25,775 - +0.1
25,906 + -0.6
25,906 + -0.5
25,936 - +0.0
25,987 - -0.4
26,070 + +0.4
26,071 - +0.2
26,116 - -0.0
26,116 - +1.4
26,116 - +0.1
26,144 + -0.2
26,299 + H281DRAFT_06425 0.49 -0.1
26,514 + +0.3
26,515 - -0.1
26,673 + +0.0
26,673 + +0.3
26,674 - -0.3
26,682 - +0.4
26,743 - -0.2
26,743 - +0.2
26,743 - +0.5
26,743 - +1.3
26,837 + +0.7
26,838 - +0.0
27,126 - H281DRAFT_06426 0.12 +0.7
27,451 - H281DRAFT_06426 0.26 +0.3
27,452 + H281DRAFT_06426 0.26 +1.3
27,453 - H281DRAFT_06426 0.26 +0.0
27,453 - H281DRAFT_06426 0.26 +0.1
27,453 - H281DRAFT_06426 0.26 -0.0

Or see this region's nucleotide sequence