Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06338 and H281DRAFT_06339 are separated by 81 nucleotides H281DRAFT_06339 and H281DRAFT_06340 are separated by 279 nucleotides H281DRAFT_06340 and H281DRAFT_06341 are separated by 6 nucleotides
H281DRAFT_06338: H281DRAFT_06338 - 2-haloacid dehalogenase, at 13,144 to 13,812
_06338
H281DRAFT_06339: H281DRAFT_06339 - hypothetical protein, at 13,894 to 14,118
_06339
H281DRAFT_06340: H281DRAFT_06340 - Predicted N-acetyltransferase YhbS, at 14,398 to 15,264
_06340
H281DRAFT_06341: H281DRAFT_06341 - glyoxylate/hydroxypyruvate reductase A, at 15,271 to 16,197
_06341
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1 at 13.478 kb on + strand, within H281DRAFT_06338 at 13.823 kb on + strand at 13.908 kb on + strand at 14.197 kb on - strand at 14.215 kb on + strand at 14.256 kb on + strand at 14.256 kb on + strand at 14.416 kb on + strand at 14.416 kb on + strand at 14.416 kb on + strand at 14.416 kb on + strand at 14.579 kb on - strand, within H281DRAFT_06340 at 15.236 kb on - strand at 15.283 kb on + strand at 15.284 kb on - strand at 15.286 kb on - strand at 15.347 kb on + strand at 15.562 kb on + strand, within H281DRAFT_06341 at 15.773 kb on + strand, within H281DRAFT_06341 at 15.773 kb on + strand, within H281DRAFT_06341 at 15.774 kb on - strand, within H281DRAFT_06341 at 15.791 kb on - strand, within H281DRAFT_06341 at 16.183 kb on - strand at 16.193 kb on - strand at 16.196 kb on - strand at 16.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 13,478 + H281DRAFT_06338 0.50 -0.1 13,823 + -0.7 13,908 + +0.2 14,197 - +0.9 14,215 + -0.8 14,256 + -0.6 14,256 + -0.6 14,416 + -0.2 14,416 + -0.2 14,416 + -0.9 14,416 + -0.3 14,579 - H281DRAFT_06340 0.21 +0.4 15,236 - -0.9 15,283 + +1.3 15,284 - +1.0 15,286 - -0.3 15,347 + -0.3 15,562 + H281DRAFT_06341 0.31 +0.2 15,773 + H281DRAFT_06341 0.54 +0.4 15,773 + H281DRAFT_06341 0.54 +1.1 15,774 - H281DRAFT_06341 0.54 +0.5 15,791 - H281DRAFT_06341 0.56 +0.2 16,183 - -0.2 16,193 - +0.2 16,196 - -0.4 16,196 - -0.4
Or see this region's nucleotide sequence