Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05320 and H281DRAFT_05321 are separated by 125 nucleotides H281DRAFT_05321 and H281DRAFT_05322 overlap by 4 nucleotides
H281DRAFT_05320: H281DRAFT_05320 - galactarate dehydratase, at 71,056 to 72,645
_05320
H281DRAFT_05321: H281DRAFT_05321 - uronate dehydrogenase, at 72,771 to 73,613
_05321
H281DRAFT_05322: H281DRAFT_05322 - gluconolactonase (EC 3.1.1.17), at 73,610 to 74,563
_05322
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 72.069 kb on - strand, within H281DRAFT_05320 at 72.128 kb on - strand, within H281DRAFT_05320 at 72.247 kb on - strand, within H281DRAFT_05320 at 72.307 kb on + strand, within H281DRAFT_05320 at 72.307 kb on + strand, within H281DRAFT_05320 at 72.333 kb on + strand, within H281DRAFT_05320 at 72.405 kb on + strand, within H281DRAFT_05320 at 72.406 kb on - strand, within H281DRAFT_05320 at 72.684 kb on + strand at 72.685 kb on - strand at 72.720 kb on + strand at 72.720 kb on + strand at 72.721 kb on - strand at 72.751 kb on + strand at 72.751 kb on + strand at 72.761 kb on + strand at 73.089 kb on + strand, within H281DRAFT_05321 at 73.251 kb on + strand, within H281DRAFT_05321 at 73.254 kb on + strand, within H281DRAFT_05321 at 73.254 kb on + strand, within H281DRAFT_05321 at 73.255 kb on - strand, within H281DRAFT_05321 at 73.255 kb on - strand, within H281DRAFT_05321 at 73.350 kb on + strand, within H281DRAFT_05321 at 73.417 kb on - strand, within H281DRAFT_05321 at 73.582 kb on + strand at 73.715 kb on + strand, within H281DRAFT_05322 at 74.169 kb on - strand, within H281DRAFT_05322 at 74.169 kb on - strand, within H281DRAFT_05322 at 74.319 kb on - strand, within H281DRAFT_05322
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 72,069 - H281DRAFT_05320 0.64 +0.3 72,128 - H281DRAFT_05320 0.67 +0.4 72,247 - H281DRAFT_05320 0.75 +0.6 72,307 + H281DRAFT_05320 0.79 +1.2 72,307 + H281DRAFT_05320 0.79 +0.2 72,333 + H281DRAFT_05320 0.80 +0.2 72,405 + H281DRAFT_05320 0.85 +0.5 72,406 - H281DRAFT_05320 0.85 -0.3 72,684 + +0.7 72,685 - -1.4 72,720 + +0.0 72,720 + -0.9 72,721 - -0.4 72,751 + +0.2 72,751 + +0.6 72,761 + -0.1 73,089 + H281DRAFT_05321 0.38 +1.2 73,251 + H281DRAFT_05321 0.57 +1.2 73,254 + H281DRAFT_05321 0.57 +0.4 73,254 + H281DRAFT_05321 0.57 +0.5 73,255 - H281DRAFT_05321 0.57 -0.0 73,255 - H281DRAFT_05321 0.57 +0.4 73,350 + H281DRAFT_05321 0.69 +0.4 73,417 - H281DRAFT_05321 0.77 -0.1 73,582 + +0.1 73,715 + H281DRAFT_05322 0.11 +0.8 74,169 - H281DRAFT_05322 0.59 -0.0 74,169 - H281DRAFT_05322 0.59 +0.5 74,319 - H281DRAFT_05322 0.74 +0.5
Or see this region's nucleotide sequence