Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04704 and H281DRAFT_04705 overlap by 4 nucleotides H281DRAFT_04705 and H281DRAFT_04706 are separated by 48 nucleotides H281DRAFT_04706 and H281DRAFT_04707 overlap by 4 nucleotides H281DRAFT_04707 and H281DRAFT_04708 overlap by 8 nucleotides
H281DRAFT_04704: H281DRAFT_04704 - Deoxyadenosine/deoxycytidine kinase, at 117,480 to 118,160
_04704
H281DRAFT_04705: H281DRAFT_04705 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 118,157 to 118,690
_04705
H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337
_04706
H281DRAFT_04707: H281DRAFT_04707 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 120,334 to 121,020
_04707
H281DRAFT_04708: H281DRAFT_04708 - regulatory inactivation of DnaA Hda protein, at 121,013 to 121,756
_04708
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 117.965 kb on - strand, within H281DRAFT_04704 at 118.086 kb on - strand, within H281DRAFT_04704 at 118.086 kb on - strand, within H281DRAFT_04704 at 118.086 kb on - strand, within H281DRAFT_04704 at 118.696 kb on - strand at 118.696 kb on - strand at 118.696 kb on - strand at 118.696 kb on - strand at 118.710 kb on - strand at 118.889 kb on - strand at 119.006 kb on - strand, within H281DRAFT_04706 at 119.179 kb on - strand, within H281DRAFT_04706 at 119.624 kb on + strand, within H281DRAFT_04706 at 119.625 kb on - strand, within H281DRAFT_04706 at 119.625 kb on - strand, within H281DRAFT_04706 at 119.647 kb on - strand, within H281DRAFT_04706 at 119.676 kb on + strand, within H281DRAFT_04706 at 119.676 kb on + strand, within H281DRAFT_04706 at 119.676 kb on + strand, within H281DRAFT_04706 at 119.677 kb on - strand, within H281DRAFT_04706 at 119.677 kb on - strand, within H281DRAFT_04706 at 119.679 kb on + strand, within H281DRAFT_04706 at 119.680 kb on - strand, within H281DRAFT_04706 at 119.680 kb on - strand, within H281DRAFT_04706 at 119.751 kb on - strand, within H281DRAFT_04706 at 119.975 kb on + strand, within H281DRAFT_04706 at 119.976 kb on - strand, within H281DRAFT_04706 at 120.035 kb on - strand, within H281DRAFT_04706 at 120.035 kb on - strand, within H281DRAFT_04706 at 120.116 kb on + strand, within H281DRAFT_04706 at 120.116 kb on + strand, within H281DRAFT_04706 at 120.312 kb on - strand at 120.317 kb on - strand at 120.473 kb on + strand, within H281DRAFT_04707 at 120.551 kb on + strand, within H281DRAFT_04707 at 120.779 kb on + strand, within H281DRAFT_04707 at 120.779 kb on + strand, within H281DRAFT_04707 at 120.780 kb on - strand, within H281DRAFT_04707 at 120.780 kb on - strand, within H281DRAFT_04707 at 120.848 kb on + strand, within H281DRAFT_04707 at 120.879 kb on - strand, within H281DRAFT_04707 at 120.887 kb on + strand, within H281DRAFT_04707 at 120.887 kb on + strand, within H281DRAFT_04707 at 120.887 kb on + strand at 120.930 kb on + strand, within H281DRAFT_04707 at 121.029 kb on - strand at 121.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 117,965 - H281DRAFT_04704 0.71 -0.2 118,086 - H281DRAFT_04704 0.89 +0.9 118,086 - H281DRAFT_04704 0.89 -0.2 118,086 - H281DRAFT_04704 0.89 -0.0 118,696 - +0.1 118,696 - +0.5 118,696 - +0.3 118,696 - +0.5 118,710 - +0.4 118,889 - +1.4 119,006 - H281DRAFT_04706 0.17 -0.4 119,179 - H281DRAFT_04706 0.28 -0.1 119,624 + H281DRAFT_04706 0.55 -0.3 119,625 - H281DRAFT_04706 0.55 -0.5 119,625 - H281DRAFT_04706 0.55 +0.0 119,647 - H281DRAFT_04706 0.57 -0.5 119,676 + H281DRAFT_04706 0.59 -0.5 119,676 + H281DRAFT_04706 0.59 -0.7 119,676 + H281DRAFT_04706 0.59 -0.2 119,677 - H281DRAFT_04706 0.59 -0.7 119,677 - H281DRAFT_04706 0.59 -0.6 119,679 + H281DRAFT_04706 0.59 -0.6 119,680 - H281DRAFT_04706 0.59 -0.3 119,680 - H281DRAFT_04706 0.59 -0.6 119,751 - H281DRAFT_04706 0.63 -0.6 119,975 + H281DRAFT_04706 0.77 -0.9 119,976 - H281DRAFT_04706 0.77 +0.1 120,035 - H281DRAFT_04706 0.81 -0.6 120,035 - H281DRAFT_04706 0.81 -1.1 120,116 + H281DRAFT_04706 0.86 +0.0 120,116 + H281DRAFT_04706 0.86 -2.7 120,312 - +0.0 120,317 - +0.2 120,473 + H281DRAFT_04707 0.20 -2.8 120,551 + H281DRAFT_04707 0.32 -0.2 120,779 + H281DRAFT_04707 0.65 -0.6 120,779 + H281DRAFT_04707 0.65 -3.6 120,780 - H281DRAFT_04707 0.65 -2.6 120,780 - H281DRAFT_04707 0.65 -3.8 120,848 + H281DRAFT_04707 0.75 -1.9 120,879 - H281DRAFT_04707 0.79 -3.7 120,887 + H281DRAFT_04707 0.80 -1.5 120,887 + H281DRAFT_04707 0.80 -2.6 120,887 + -0.8 120,930 + H281DRAFT_04707 0.87 -2.0 121,029 - +0.1 121,029 - -0.3
Or see this region's nucleotide sequence