Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04427

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04426 and H281DRAFT_04427 overlap by 4 nucleotidesH281DRAFT_04427 and H281DRAFT_04428 are separated by 74 nucleotides H281DRAFT_04426: H281DRAFT_04426 - multidrug resistance protein, MATE family, at 144,249 to 145,601 _04426 H281DRAFT_04427: H281DRAFT_04427 - hypothetical protein, at 145,598 to 145,945 _04427 H281DRAFT_04428: H281DRAFT_04428 - Uncharacterized protein YjbI, contains pentapeptide repeats, at 146,020 to 146,760 _04428 Position (kb) 145 146Strain fitness (log2 ratio) -1 0 1at 144.627 kb on - strand, within H281DRAFT_04426at 144.722 kb on - strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.024 kb on + strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.025 kb on - strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.030 kb on + strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.031 kb on - strand, within H281DRAFT_04426at 145.129 kb on + strand, within H281DRAFT_04426at 145.129 kb on + strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.130 kb on - strand, within H281DRAFT_04426at 145.174 kb on + strand, within H281DRAFT_04426at 145.287 kb on + strand, within H281DRAFT_04426at 145.436 kb on - strandat 145.797 kb on - strand, within H281DRAFT_04427at 145.797 kb on - strand, within H281DRAFT_04427at 145.909 kb on + strand, within H281DRAFT_04427at 145.934 kb on - strandat 145.937 kb on - strandat 145.938 kb on + strandat 145.939 kb on - strandat 145.986 kb on - strandat 145.986 kb on - strandat 146.714 kb on + strandat 146.714 kb on + strandat 146.758 kb on + strandat 146.758 kb on + strandat 146.825 kb on + strandat 146.826 kb on - strandat 146.838 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
144,627 - H281DRAFT_04426 0.28 +0.4
144,722 - H281DRAFT_04426 0.35 -0.2
145,024 + H281DRAFT_04426 0.57 +0.0
145,024 + H281DRAFT_04426 0.57 +0.0
145,024 + H281DRAFT_04426 0.57 +0.1
145,024 + H281DRAFT_04426 0.57 +0.3
145,024 + H281DRAFT_04426 0.57 -0.6
145,024 + H281DRAFT_04426 0.57 +0.3
145,024 + H281DRAFT_04426 0.57 +0.6
145,025 - H281DRAFT_04426 0.57 +0.2
145,025 - H281DRAFT_04426 0.57 +0.5
145,025 - H281DRAFT_04426 0.57 -0.2
145,025 - H281DRAFT_04426 0.57 +0.3
145,025 - H281DRAFT_04426 0.57 -0.1
145,025 - H281DRAFT_04426 0.57 +0.5
145,030 + H281DRAFT_04426 0.58 +0.4
145,030 + H281DRAFT_04426 0.58 -0.3
145,030 + H281DRAFT_04426 0.58 -0.2
145,031 - H281DRAFT_04426 0.58 -0.2
145,031 - H281DRAFT_04426 0.58 -0.3
145,031 - H281DRAFT_04426 0.58 -0.3
145,129 + H281DRAFT_04426 0.65 +0.2
145,129 + H281DRAFT_04426 0.65 -1.1
145,130 - H281DRAFT_04426 0.65 -0.5
145,130 - H281DRAFT_04426 0.65 -0.3
145,130 - H281DRAFT_04426 0.65 +0.1
145,130 - H281DRAFT_04426 0.65 -0.5
145,174 + H281DRAFT_04426 0.68 +0.0
145,287 + H281DRAFT_04426 0.77 -0.1
145,436 - -0.2
145,797 - H281DRAFT_04427 0.57 +0.6
145,797 - H281DRAFT_04427 0.57 -0.0
145,909 + H281DRAFT_04427 0.89 +1.3
145,934 - +0.6
145,937 - +0.3
145,938 + +0.3
145,939 - +0.1
145,986 - +0.1
145,986 - +0.7
146,714 + -0.1
146,714 + +0.0
146,758 + +0.2
146,758 + -0.0
146,825 + -0.1
146,826 - +0.4
146,838 - +0.2

Or see this region's nucleotide sequence