Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03819 and H281DRAFT_03820 are separated by 39 nucleotides H281DRAFT_03820 and H281DRAFT_03821 are separated by 226 nucleotides H281DRAFT_03821 and H281DRAFT_03822 are separated by 94 nucleotides
H281DRAFT_03819: H281DRAFT_03819 - hypothetical protein, at 343,968 to 345,551
_03819
H281DRAFT_03820: H281DRAFT_03820 - methylated-DNA-[protein]-cysteine S-methyltransferase, at 345,591 to 346,193
_03820
H281DRAFT_03821: H281DRAFT_03821 - serine/threonine protein kinase, at 346,420 to 347,799
_03821
H281DRAFT_03822: H281DRAFT_03822 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 347,894 to 348,856
_03822
Position (kb) 346
347
348 Strain fitness (log2 ratio) -1
0
1
2 at 346.123 kb on - strand, within H281DRAFT_03820 at 346.186 kb on + strand at 346.195 kb on + strand at 346.256 kb on - strand at 346.316 kb on + strand at 346.317 kb on - strand at 346.692 kb on - strand at 346.747 kb on - strand, within H281DRAFT_03821 at 346.747 kb on - strand, within H281DRAFT_03821 at 347.050 kb on - strand, within H281DRAFT_03821 at 347.050 kb on - strand, within H281DRAFT_03821 at 347.139 kb on - strand, within H281DRAFT_03821 at 347.389 kb on + strand, within H281DRAFT_03821 at 347.431 kb on - strand, within H281DRAFT_03821 at 347.674 kb on - strand at 348.362 kb on + strand, within H281DRAFT_03822 at 348.662 kb on + strand, within H281DRAFT_03822
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 346,123 - H281DRAFT_03820 0.88 +0.4 346,186 + +0.6 346,195 + +0.2 346,256 - +0.3 346,316 + +0.2 346,317 - +1.0 346,692 - -1.4 346,747 - H281DRAFT_03821 0.24 +0.8 346,747 - H281DRAFT_03821 0.24 +0.3 347,050 - H281DRAFT_03821 0.46 +0.8 347,050 - H281DRAFT_03821 0.46 -0.2 347,139 - H281DRAFT_03821 0.52 +2.5 347,389 + H281DRAFT_03821 0.70 +0.2 347,431 - H281DRAFT_03821 0.73 +0.7 347,674 - +0.3 348,362 + H281DRAFT_03822 0.49 +0.6 348,662 + H281DRAFT_03822 0.80 +0.6
Or see this region's nucleotide sequence