Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03742

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03741 and H281DRAFT_03742 are separated by 313 nucleotidesH281DRAFT_03742 and H281DRAFT_03743 are separated by 191 nucleotides H281DRAFT_03741: H281DRAFT_03741 - DNA-binding transcriptional regulator, LysR family, at 256,562 to 257,452 _03741 H281DRAFT_03742: H281DRAFT_03742 - Sugar phosphate permease, at 257,766 to 259,079 _03742 H281DRAFT_03743: H281DRAFT_03743 - hypothetical protein, at 259,271 to 260,077 _03743 Position (kb) 257 258 259 260Strain fitness (log2 ratio) -1 0 1at 257.010 kb on + strand, within H281DRAFT_03741at 257.247 kb on + strand, within H281DRAFT_03741at 257.247 kb on + strand, within H281DRAFT_03741at 257.505 kb on + strandat 257.621 kb on + strandat 257.682 kb on + strandat 258.037 kb on - strand, within H281DRAFT_03742at 258.378 kb on - strand, within H281DRAFT_03742at 258.405 kb on + strand, within H281DRAFT_03742at 258.406 kb on - strand, within H281DRAFT_03742at 259.156 kb on - strandat 259.581 kb on + strand, within H281DRAFT_03743at 259.686 kb on - strand, within H281DRAFT_03743at 259.738 kb on + strand, within H281DRAFT_03743at 259.790 kb on - strand, within H281DRAFT_03743at 260.009 kb on + strandat 260.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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257,010 + H281DRAFT_03741 0.50 -0.9
257,247 + H281DRAFT_03741 0.77 -1.3
257,247 + H281DRAFT_03741 0.77 +1.0
257,505 + +0.9
257,621 + -0.0
257,682 + +0.4
258,037 - H281DRAFT_03742 0.21 +0.5
258,378 - H281DRAFT_03742 0.47 +0.1
258,405 + H281DRAFT_03742 0.49 +0.7
258,406 - H281DRAFT_03742 0.49 +0.9
259,156 - +0.3
259,581 + H281DRAFT_03743 0.38 -0.3
259,686 - H281DRAFT_03743 0.51 +0.3
259,738 + H281DRAFT_03743 0.58 +0.8
259,790 - H281DRAFT_03743 0.64 +0.5
260,009 + -0.1
260,078 - -1.5

Or see this region's nucleotide sequence