Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03723 and H281DRAFT_03724 are separated by 36 nucleotides H281DRAFT_03724 and H281DRAFT_03725 are separated by 9 nucleotides H281DRAFT_03725 and H281DRAFT_03726 are separated by 129 nucleotides H281DRAFT_03726 and H281DRAFT_03727 are separated by 8 nucleotides
H281DRAFT_03723: H281DRAFT_03723 - transcriptional regulator, AraC family with amidase-like domain, at 238,015 to 238,962
_03723
H281DRAFT_03724: H281DRAFT_03724 - hypothetical protein, at 238,999 to 239,652
_03724
H281DRAFT_03725: H281DRAFT_03725 - hypothetical protein, at 239,662 to 240,882
_03725
H281DRAFT_03726: H281DRAFT_03726 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 241,012 to 241,779
_03726
H281DRAFT_03727: H281DRAFT_03727 - Predicted metal-binding membrane protein, at 241,788 to 242,633
_03727
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 239.577 kb on - strand, within H281DRAFT_03724 at 239.619 kb on - strand at 239.971 kb on + strand, within H281DRAFT_03725 at 239.974 kb on - strand, within H281DRAFT_03725 at 240.092 kb on - strand, within H281DRAFT_03725 at 240.936 kb on + strand at 240.936 kb on + strand at 240.960 kb on + strand at 241.382 kb on - strand, within H281DRAFT_03726 at 241.462 kb on - strand, within H281DRAFT_03726 at 241.655 kb on - strand, within H281DRAFT_03726 at 241.655 kb on - strand, within H281DRAFT_03726 at 241.663 kb on + strand, within H281DRAFT_03726 at 241.664 kb on - strand, within H281DRAFT_03726 at 241.697 kb on - strand, within H281DRAFT_03726
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 239,577 - H281DRAFT_03724 0.88 +0.2 239,619 - -0.1 239,971 + H281DRAFT_03725 0.25 +0.5 239,974 - H281DRAFT_03725 0.26 +0.7 240,092 - H281DRAFT_03725 0.35 +0.5 240,936 + -1.8 240,936 + +1.0 240,960 + +0.5 241,382 - H281DRAFT_03726 0.48 -0.0 241,462 - H281DRAFT_03726 0.59 +0.4 241,655 - H281DRAFT_03726 0.84 +0.2 241,655 - H281DRAFT_03726 0.84 +0.4 241,663 + H281DRAFT_03726 0.85 -0.4 241,664 - H281DRAFT_03726 0.85 +0.9 241,697 - H281DRAFT_03726 0.89 +0.8
Or see this region's nucleotide sequence