Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03396 and H281DRAFT_03397 overlap by 14 nucleotides H281DRAFT_03397 and H281DRAFT_03398 are separated by 24 nucleotides H281DRAFT_03398 and H281DRAFT_03399 are separated by 75 nucleotides H281DRAFT_03399 and H281DRAFT_03400 are separated by 24 nucleotides
H281DRAFT_03396: H281DRAFT_03396 - AraC-type DNA-binding protein, at 467,099 to 468,049
_03396
H281DRAFT_03397: H281DRAFT_03397 - hypothetical protein, at 468,036 to 468,293
_03397
H281DRAFT_03398: H281DRAFT_03398 - protein of unknown function (DUF3331), at 468,318 to 468,731
_03398
H281DRAFT_03399: H281DRAFT_03399 - cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10), at 468,807 to 469,796
_03399
H281DRAFT_03400: H281DRAFT_03400 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 469,821 to 471,218
_03400
Position (kb) 468
469
470 Strain fitness (log2 ratio) -1
0
1 at 468.336 kb on + strand at 468.336 kb on + strand at 468.555 kb on + strand, within H281DRAFT_03398 at 468.555 kb on + strand, within H281DRAFT_03398 at 468.556 kb on - strand, within H281DRAFT_03398 at 468.787 kb on - strand at 468.857 kb on - strand at 468.862 kb on + strand at 469.307 kb on - strand, within H281DRAFT_03399 at 469.673 kb on + strand, within H281DRAFT_03399 at 469.727 kb on - strand at 469.810 kb on - strand at 469.810 kb on - strand at 469.961 kb on + strand, within H281DRAFT_03400 at 469.962 kb on - strand, within H281DRAFT_03400 at 470.089 kb on + strand, within H281DRAFT_03400 at 470.102 kb on + strand at 470.179 kb on + strand, within H281DRAFT_03400 at 470.180 kb on - strand at 470.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 468,336 + +0.4 468,336 + +1.1 468,555 + H281DRAFT_03398 0.57 +0.0 468,555 + H281DRAFT_03398 0.57 -0.4 468,556 - H281DRAFT_03398 0.57 -0.7 468,787 - +0.6 468,857 - -0.6 468,862 + -0.1 469,307 - H281DRAFT_03399 0.51 +0.4 469,673 + H281DRAFT_03399 0.87 +1.3 469,727 - -0.6 469,810 - +0.3 469,810 - -0.5 469,961 + H281DRAFT_03400 0.10 +1.5 469,962 - H281DRAFT_03400 0.10 +0.4 470,089 + H281DRAFT_03400 0.19 +0.8 470,102 + +1.6 470,179 + H281DRAFT_03400 0.26 +0.4 470,180 - +1.7 470,682 - -0.6
Or see this region's nucleotide sequence