Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03356

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03354 and H281DRAFT_03355 overlap by 1 nucleotidesH281DRAFT_03355 and H281DRAFT_03356 overlap by 16 nucleotidesH281DRAFT_03356 and H281DRAFT_03357 overlap by 1 nucleotidesH281DRAFT_03357 and H281DRAFT_03358 are separated by 33 nucleotides H281DRAFT_03354: H281DRAFT_03354 - Putative secretion activating protein, at 413,212 to 413,694 _03354 H281DRAFT_03355: H281DRAFT_03355 - hypothetical protein, at 413,694 to 414,386 _03355 H281DRAFT_03356: H281DRAFT_03356 - glycerate dehydrogenase, at 414,371 to 415,330 _03356 H281DRAFT_03357: H281DRAFT_03357 - transcriptional regulator, GntR family, at 415,330 to 416,040 _03357 H281DRAFT_03358: H281DRAFT_03358 - TRAP transporter, DctM subunit, at 416,074 to 417,987 _03358 Position (kb) 414 415 416Strain fitness (log2 ratio) -2 -1 0 1at 413.398 kb on + strand, within H281DRAFT_03354at 413.398 kb on + strand, within H281DRAFT_03354at 413.464 kb on + strand, within H281DRAFT_03354at 414.756 kb on + strand, within H281DRAFT_03356at 414.945 kb on + strand, within H281DRAFT_03356at 415.768 kb on + strand, within H281DRAFT_03357at 416.080 kb on + strandat 416.096 kb on - strandat 416.279 kb on + strand, within H281DRAFT_03358at 416.279 kb on + strand, within H281DRAFT_03358

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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413,398 + H281DRAFT_03354 0.39 -0.4
413,398 + H281DRAFT_03354 0.39 +0.4
413,464 + H281DRAFT_03354 0.52 -0.1
414,756 + H281DRAFT_03356 0.40 +1.3
414,945 + H281DRAFT_03356 0.60 +0.2
415,768 + H281DRAFT_03357 0.62 -0.8
416,080 + -0.2
416,096 - -2.0
416,279 + H281DRAFT_03358 0.11 +0.2
416,279 + H281DRAFT_03358 0.11 -0.3

Or see this region's nucleotide sequence