Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03349 and H281DRAFT_03350 are separated by 17 nucleotides H281DRAFT_03350 and H281DRAFT_03351 are separated by 86 nucleotides H281DRAFT_03351 and H281DRAFT_03352 are separated by 179 nucleotides
H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063
_03349
H281DRAFT_03350: H281DRAFT_03350 - amino acid ABC transporter substrate-binding protein, PAAT family, at 409,081 to 409,836
_03350
H281DRAFT_03351: H281DRAFT_03351 - transcriptional regulator, IclR family, at 409,923 to 410,687
_03351
H281DRAFT_03352: H281DRAFT_03352 - Polyketide cyclase / dehydrase and lipid transport, at 410,867 to 411,412
_03352
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 409.125 kb on - strand at 409.209 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350 at 409.500 kb on - strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.545 kb on - strand, within H281DRAFT_03350 at 409.938 kb on - strand at 409.965 kb on + strand at 409.966 kb on - strand at 409.966 kb on - strand at 410.155 kb on - strand, within H281DRAFT_03351 at 410.543 kb on - strand, within H281DRAFT_03351 at 410.813 kb on + strand at 410.814 kb on - strand at 410.816 kb on + strand at 410.817 kb on - strand at 410.817 kb on - strand at 410.827 kb on - strand at 410.832 kb on - strand at 410.898 kb on + strand at 411.006 kb on + strand, within H281DRAFT_03352 at 411.017 kb on + strand, within H281DRAFT_03352 at 411.196 kb on - strand, within H281DRAFT_03352 at 411.236 kb on + strand, within H281DRAFT_03352 at 411.288 kb on - strand, within H281DRAFT_03352 at 411.315 kb on + strand, within H281DRAFT_03352 at 411.507 kb on + strand at 411.605 kb on - strand at 411.605 kb on - strand at 411.608 kb on + strand at 411.609 kb on - strand at 411.609 kb on - strand at 411.667 kb on + strand at 411.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 409,125 - -0.2 409,209 - H281DRAFT_03350 0.17 -0.0 409,238 - H281DRAFT_03350 0.21 +0.1 409,238 - H281DRAFT_03350 0.21 +0.0 409,500 - H281DRAFT_03350 0.55 -0.4 409,544 + H281DRAFT_03350 0.61 +0.0 409,544 + H281DRAFT_03350 0.61 -0.1 409,544 + H281DRAFT_03350 0.61 +0.2 409,545 - H281DRAFT_03350 0.61 -0.8 409,938 - +0.0 409,965 + +0.1 409,966 - +0.4 409,966 - -1.3 410,155 - H281DRAFT_03351 0.30 +0.6 410,543 - H281DRAFT_03351 0.81 +0.3 410,813 + -0.9 410,814 - -0.2 410,816 + +0.2 410,817 - +0.5 410,817 - +0.7 410,827 - +0.1 410,832 - +0.2 410,898 + +0.6 411,006 + H281DRAFT_03352 0.25 +1.5 411,017 + H281DRAFT_03352 0.27 +0.6 411,196 - H281DRAFT_03352 0.60 +0.3 411,236 + H281DRAFT_03352 0.68 -1.9 411,288 - H281DRAFT_03352 0.77 +0.4 411,315 + H281DRAFT_03352 0.82 +1.3 411,507 + -0.8 411,605 - +0.1 411,605 - +0.7 411,608 + -0.1 411,609 - -0.0 411,609 - +0.0 411,667 + +1.3 411,668 - +0.4
Or see this region's nucleotide sequence