Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03146 and H281DRAFT_03147 are separated by 27 nucleotides H281DRAFT_03147 and H281DRAFT_03148 are separated by 225 nucleotides
H281DRAFT_03146: H281DRAFT_03146 - Predicted amidohydrolase, at 186,229 to 187,116
_03146
H281DRAFT_03147: H281DRAFT_03147 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 187,144 to 187,545
_03147
H281DRAFT_03148: H281DRAFT_03148 - hypothetical protein, at 187,771 to 188,844
_03148
Position (kb) 187
188 Strain fitness (log2 ratio) -1
0
1 at 186.151 kb on + strand at 186.152 kb on - strand at 186.152 kb on - strand at 186.225 kb on + strand at 186.226 kb on - strand at 186.320 kb on + strand, within H281DRAFT_03146 at 186.321 kb on - strand, within H281DRAFT_03146 at 186.595 kb on + strand, within H281DRAFT_03146 at 186.607 kb on + strand, within H281DRAFT_03146 at 186.607 kb on + strand, within H281DRAFT_03146 at 186.614 kb on - strand, within H281DRAFT_03146 at 186.807 kb on + strand, within H281DRAFT_03146 at 186.807 kb on + strand, within H281DRAFT_03146 at 186.844 kb on + strand, within H281DRAFT_03146 at 186.844 kb on + strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.845 kb on - strand, within H281DRAFT_03146 at 186.889 kb on - strand, within H281DRAFT_03146 at 186.919 kb on + strand, within H281DRAFT_03146 at 187.070 kb on + strand at 187.122 kb on - strand at 187.122 kb on - strand at 187.465 kb on + strand, within H281DRAFT_03147 at 187.535 kb on + strand at 187.605 kb on + strand at 187.801 kb on + strand at 187.803 kb on + strand at 187.867 kb on + strand at 187.867 kb on + strand at 187.991 kb on + strand, within H281DRAFT_03148 at 188.151 kb on + strand, within H281DRAFT_03148 at 188.152 kb on - strand, within H281DRAFT_03148 at 188.154 kb on + strand, within H281DRAFT_03148 at 188.155 kb on + strand, within H281DRAFT_03148 at 188.155 kb on + strand, within H281DRAFT_03148 at 188.156 kb on - strand, within H281DRAFT_03148 at 188.156 kb on - strand, within H281DRAFT_03148 at 188.164 kb on - strand, within H281DRAFT_03148 at 188.314 kb on - strand, within H281DRAFT_03148 at 188.418 kb on + strand, within H281DRAFT_03148
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 186,151 + +0.6 186,152 - -0.9 186,152 - +0.0 186,225 + -0.3 186,226 - +0.6 186,320 + H281DRAFT_03146 0.10 +0.1 186,321 - H281DRAFT_03146 0.10 +0.2 186,595 + H281DRAFT_03146 0.41 +0.8 186,607 + H281DRAFT_03146 0.43 +0.3 186,607 + H281DRAFT_03146 0.43 +1.0 186,614 - H281DRAFT_03146 0.43 +0.2 186,807 + H281DRAFT_03146 0.65 -0.2 186,807 + H281DRAFT_03146 0.65 -0.6 186,844 + H281DRAFT_03146 0.69 -0.3 186,844 + H281DRAFT_03146 0.69 +1.1 186,845 - H281DRAFT_03146 0.69 +1.3 186,845 - H281DRAFT_03146 0.69 -0.1 186,845 - H281DRAFT_03146 0.69 +0.3 186,889 - H281DRAFT_03146 0.74 +0.3 186,919 + H281DRAFT_03146 0.78 +0.1 187,070 + +0.0 187,122 - -0.5 187,122 - -0.1 187,465 + H281DRAFT_03147 0.80 +0.6 187,535 + +0.1 187,605 + +0.5 187,801 + +0.1 187,803 + -0.4 187,867 + -0.1 187,867 + +0.2 187,991 + H281DRAFT_03148 0.20 -0.3 188,151 + H281DRAFT_03148 0.35 -0.4 188,152 - H281DRAFT_03148 0.35 +0.4 188,154 + H281DRAFT_03148 0.36 -0.5 188,155 + H281DRAFT_03148 0.36 -0.2 188,155 + H281DRAFT_03148 0.36 +0.9 188,156 - H281DRAFT_03148 0.36 -0.1 188,156 - H281DRAFT_03148 0.36 -0.4 188,164 - H281DRAFT_03148 0.37 -0.1 188,314 - H281DRAFT_03148 0.51 +0.2 188,418 + H281DRAFT_03148 0.60 +1.2
Or see this region's nucleotide sequence