Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03016 and H281DRAFT_03017 are separated by 170 nucleotides H281DRAFT_03017 and H281DRAFT_03018 are separated by 176 nucleotides
H281DRAFT_03016: H281DRAFT_03016 - aldehyde dehydrogenase (acceptor), at 43,909 to 45,360
_03016
H281DRAFT_03017: H281DRAFT_03017 - ketopantoate reductase, at 45,531 to 46,508
_03017
H281DRAFT_03018: H281DRAFT_03018 - Threonine/homoserine/homoserine lactone efflux protein, at 46,685 to 47,305
_03018
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.810 kb on - strand, within H281DRAFT_03016 at 44.932 kb on + strand, within H281DRAFT_03016 at 44.933 kb on - strand, within H281DRAFT_03016 at 45.116 kb on + strand, within H281DRAFT_03016 at 45.116 kb on + strand, within H281DRAFT_03016 at 45.116 kb on + strand, within H281DRAFT_03016 at 45.117 kb on - strand, within H281DRAFT_03016 at 45.139 kb on + strand, within H281DRAFT_03016 at 45.140 kb on - strand, within H281DRAFT_03016 at 45.140 kb on - strand, within H281DRAFT_03016 at 45.233 kb on - strand at 45.233 kb on - strand at 45.238 kb on + strand at 45.240 kb on + strand at 45.241 kb on - strand at 45.359 kb on - strand at 45.359 kb on - strand at 45.368 kb on - strand at 45.524 kb on + strand at 45.698 kb on + strand, within H281DRAFT_03017 at 46.186 kb on + strand, within H281DRAFT_03017 at 46.187 kb on - strand, within H281DRAFT_03017 at 46.526 kb on + strand at 46.527 kb on - strand at 46.527 kb on - strand at 46.617 kb on - strand at 46.812 kb on + strand, within H281DRAFT_03018 at 46.812 kb on + strand, within H281DRAFT_03018 at 46.813 kb on - strand, within H281DRAFT_03018 at 46.918 kb on + strand, within H281DRAFT_03018 at 47.005 kb on + strand, within H281DRAFT_03018 at 47.036 kb on + strand, within H281DRAFT_03018 at 47.037 kb on - strand, within H281DRAFT_03018 at 47.037 kb on - strand, within H281DRAFT_03018 at 47.037 kb on - strand, within H281DRAFT_03018
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 44,810 - H281DRAFT_03016 0.62 -0.2 44,932 + H281DRAFT_03016 0.70 -0.1 44,933 - H281DRAFT_03016 0.71 +0.3 45,116 + H281DRAFT_03016 0.83 -0.0 45,116 + H281DRAFT_03016 0.83 -0.8 45,116 + H281DRAFT_03016 0.83 +0.5 45,117 - H281DRAFT_03016 0.83 -0.0 45,139 + H281DRAFT_03016 0.85 +0.6 45,140 - H281DRAFT_03016 0.85 -0.0 45,140 - H281DRAFT_03016 0.85 +0.3 45,233 - -0.0 45,233 - +0.2 45,238 + -1.2 45,240 + -1.0 45,241 - -0.2 45,359 - -0.7 45,359 - +0.4 45,368 - -1.4 45,524 + +0.3 45,698 + H281DRAFT_03017 0.17 +0.8 46,186 + H281DRAFT_03017 0.67 +0.0 46,187 - H281DRAFT_03017 0.67 +0.5 46,526 + -1.3 46,527 - +0.3 46,527 - -0.1 46,617 - -0.0 46,812 + H281DRAFT_03018 0.20 -0.2 46,812 + H281DRAFT_03018 0.20 +0.9 46,813 - H281DRAFT_03018 0.21 +0.2 46,918 + H281DRAFT_03018 0.38 +0.2 47,005 + H281DRAFT_03018 0.52 +0.3 47,036 + H281DRAFT_03018 0.57 -1.3 47,037 - H281DRAFT_03018 0.57 +0.2 47,037 - H281DRAFT_03018 0.57 +0.2 47,037 - H281DRAFT_03018 0.57 +0.3
Or see this region's nucleotide sequence