Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02440

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02439 and H281DRAFT_02440 overlap by 1 nucleotidesH281DRAFT_02440 and H281DRAFT_02441 overlap by 14 nucleotides H281DRAFT_02439: H281DRAFT_02439 - Predicted secreted hydrolase, at 198 to 1,412 _02439 H281DRAFT_02440: H281DRAFT_02440 - putative ABC transport system permease protein, at 1,412 to 3,985 _02440 H281DRAFT_02441: H281DRAFT_02441 - putative ABC transport system ATP-binding protein, at 3,972 to 4,721 _02441 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -1 0 1at 0.746 kb on - strand, within H281DRAFT_02439at 0.748 kb on + strand, within H281DRAFT_02439at 0.749 kb on - strand, within H281DRAFT_02439at 0.749 kb on - strand, within H281DRAFT_02439at 0.826 kb on - strand, within H281DRAFT_02439at 0.826 kb on - strand, within H281DRAFT_02439at 0.923 kb on + strand, within H281DRAFT_02439at 0.940 kb on + strand, within H281DRAFT_02439at 1.128 kb on - strand, within H281DRAFT_02439at 1.583 kb on + strandat 1.584 kb on - strandat 1.584 kb on - strandat 1.803 kb on + strand, within H281DRAFT_02440at 1.803 kb on + strand, within H281DRAFT_02440at 1.804 kb on - strand, within H281DRAFT_02440at 1.804 kb on - strand, within H281DRAFT_02440at 2.004 kb on - strand, within H281DRAFT_02440at 2.107 kb on + strand, within H281DRAFT_02440at 2.109 kb on + strand, within H281DRAFT_02440at 2.116 kb on - strand, within H281DRAFT_02440at 2.117 kb on + strand, within H281DRAFT_02440at 2.118 kb on - strand, within H281DRAFT_02440at 2.179 kb on + strand, within H281DRAFT_02440at 2.179 kb on + strand, within H281DRAFT_02440at 2.405 kb on + strand, within H281DRAFT_02440at 2.406 kb on - strand, within H281DRAFT_02440at 2.551 kb on + strand, within H281DRAFT_02440at 2.552 kb on - strand, within H281DRAFT_02440at 2.606 kb on + strand, within H281DRAFT_02440at 2.671 kb on - strand, within H281DRAFT_02440at 3.383 kb on - strand, within H281DRAFT_02440at 3.666 kb on - strand, within H281DRAFT_02440at 3.721 kb on - strand, within H281DRAFT_02440at 3.840 kb on + strandat 4.015 kb on + strandat 4.232 kb on + strand, within H281DRAFT_02441at 4.799 kb on + strandat 4.799 kb on + strandat 4.800 kb on - strandat 4.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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746 - H281DRAFT_02439 0.45 +0.3
748 + H281DRAFT_02439 0.45 +1.1
749 - H281DRAFT_02439 0.45 +0.5
749 - H281DRAFT_02439 0.45 +0.0
826 - H281DRAFT_02439 0.52 +0.4
826 - H281DRAFT_02439 0.52 -0.0
923 + H281DRAFT_02439 0.60 -0.3
940 + H281DRAFT_02439 0.61 -0.6
1,128 - H281DRAFT_02439 0.77 +1.6
1,583 + +0.5
1,584 - +0.9
1,584 - -0.4
1,803 + H281DRAFT_02440 0.15 +0.4
1,803 + H281DRAFT_02440 0.15 -0.2
1,804 - H281DRAFT_02440 0.15 -0.8
1,804 - H281DRAFT_02440 0.15 -0.4
2,004 - H281DRAFT_02440 0.23 -0.3
2,107 + H281DRAFT_02440 0.27 +0.0
2,109 + H281DRAFT_02440 0.27 -0.3
2,116 - H281DRAFT_02440 0.27 +0.3
2,117 + H281DRAFT_02440 0.27 -1.3
2,118 - H281DRAFT_02440 0.27 -0.1
2,179 + H281DRAFT_02440 0.30 -0.5
2,179 + H281DRAFT_02440 0.30 +0.5
2,405 + H281DRAFT_02440 0.39 -0.2
2,406 - H281DRAFT_02440 0.39 -0.2
2,551 + H281DRAFT_02440 0.44 -0.2
2,552 - H281DRAFT_02440 0.44 -0.0
2,606 + H281DRAFT_02440 0.46 -0.6
2,671 - H281DRAFT_02440 0.49 +0.0
3,383 - H281DRAFT_02440 0.77 -0.0
3,666 - H281DRAFT_02440 0.88 -0.3
3,721 - H281DRAFT_02440 0.90 -0.0
3,840 + -0.1
4,015 + -0.0
4,232 + H281DRAFT_02441 0.35 -0.0
4,799 + +0.6
4,799 + -0.1
4,800 - +0.3
4,914 - +0.6

Or see this region's nucleotide sequence