Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02290 and H281DRAFT_02291 are separated by 18 nucleotides H281DRAFT_02291 and H281DRAFT_02292 are separated by 131 nucleotides H281DRAFT_02292 and H281DRAFT_02293 are separated by 120 nucleotides
H281DRAFT_02290: H281DRAFT_02290 - Threonine/homoserine/homoserine lactone efflux protein, at 436,087 to 436,674
_02290
H281DRAFT_02291: H281DRAFT_02291 - AraC-type DNA-binding protein, at 436,693 to 437,538
_02291
H281DRAFT_02292: H281DRAFT_02292 - amino acid ABC transporter substrate-binding protein, PAAT family, at 437,670 to 438,464
_02292
H281DRAFT_02293: H281DRAFT_02293 - 2-keto-4-methylthiobutyrate aminotransferase apoenzyme, at 438,585 to 439,739
_02293
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2
3 at 436.673 kb on - strand at 436.673 kb on - strand at 436.703 kb on + strand at 436.826 kb on + strand, within H281DRAFT_02291 at 436.851 kb on - strand, within H281DRAFT_02291 at 437.030 kb on - strand, within H281DRAFT_02291 at 437.041 kb on + strand, within H281DRAFT_02291 at 437.042 kb on - strand, within H281DRAFT_02291 at 437.145 kb on + strand, within H281DRAFT_02291 at 437.145 kb on + strand, within H281DRAFT_02291 at 437.145 kb on + strand, within H281DRAFT_02291 at 437.146 kb on - strand, within H281DRAFT_02291 at 437.146 kb on - strand, within H281DRAFT_02291 at 437.358 kb on - strand, within H281DRAFT_02291 at 437.459 kb on + strand at 437.598 kb on + strand at 437.599 kb on - strand at 437.599 kb on - strand at 437.603 kb on + strand at 437.701 kb on + strand at 437.800 kb on + strand, within H281DRAFT_02292 at 437.801 kb on - strand, within H281DRAFT_02292 at 437.951 kb on - strand, within H281DRAFT_02292 at 438.263 kb on + strand, within H281DRAFT_02292 at 438.464 kb on + strand at 438.465 kb on - strand at 438.465 kb on - strand at 438.493 kb on + strand at 438.493 kb on + strand at 438.520 kb on - strand at 438.520 kb on - strand at 438.574 kb on + strand at 438.574 kb on + strand at 438.574 kb on + strand at 438.575 kb on - strand at 438.782 kb on + strand, within H281DRAFT_02293 at 438.783 kb on - strand, within H281DRAFT_02293 at 438.883 kb on + strand, within H281DRAFT_02293 at 438.884 kb on - strand, within H281DRAFT_02293 at 439.030 kb on + strand, within H281DRAFT_02293 at 439.120 kb on - strand, within H281DRAFT_02293 at 439.130 kb on - strand, within H281DRAFT_02293 at 439.360 kb on + strand, within H281DRAFT_02293 at 439.360 kb on + strand, within H281DRAFT_02293 at 439.361 kb on - strand, within H281DRAFT_02293 at 439.361 kb on - strand, within H281DRAFT_02293 at 439.361 kb on - strand, within H281DRAFT_02293 at 439.361 kb on - strand, within H281DRAFT_02293 at 439.361 kb on - strand, within H281DRAFT_02293 at 439.430 kb on - strand, within H281DRAFT_02293
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 436,673 - +0.4 436,673 - +0.9 436,703 + +0.0 436,826 + H281DRAFT_02291 0.16 +0.1 436,851 - H281DRAFT_02291 0.19 +0.1 437,030 - H281DRAFT_02291 0.40 +2.8 437,041 + H281DRAFT_02291 0.41 -0.7 437,042 - H281DRAFT_02291 0.41 +0.3 437,145 + H281DRAFT_02291 0.53 +0.2 437,145 + H281DRAFT_02291 0.53 -0.2 437,145 + H281DRAFT_02291 0.53 +0.0 437,146 - H281DRAFT_02291 0.54 +0.7 437,146 - H281DRAFT_02291 0.54 -0.1 437,358 - H281DRAFT_02291 0.79 +0.2 437,459 + +0.2 437,598 + +1.0 437,599 - +0.2 437,599 - +0.3 437,603 + +0.4 437,701 + +0.1 437,800 + H281DRAFT_02292 0.16 +0.6 437,801 - H281DRAFT_02292 0.16 +0.4 437,951 - H281DRAFT_02292 0.35 +0.7 438,263 + H281DRAFT_02292 0.75 +0.2 438,464 + +0.7 438,465 - +2.2 438,465 - +0.1 438,493 + +0.7 438,493 + +0.3 438,520 - -0.3 438,520 - +1.3 438,574 + +0.6 438,574 + -1.0 438,574 + -0.1 438,575 - +0.4 438,782 + H281DRAFT_02293 0.17 +0.1 438,783 - H281DRAFT_02293 0.17 +0.6 438,883 + H281DRAFT_02293 0.26 -0.1 438,884 - H281DRAFT_02293 0.26 +0.2 439,030 + H281DRAFT_02293 0.39 -0.8 439,120 - H281DRAFT_02293 0.46 -0.2 439,130 - H281DRAFT_02293 0.47 +0.7 439,360 + H281DRAFT_02293 0.67 -0.0 439,360 + H281DRAFT_02293 0.67 +0.3 439,361 - H281DRAFT_02293 0.67 +0.2 439,361 - H281DRAFT_02293 0.67 -0.1 439,361 - H281DRAFT_02293 0.67 +0.2 439,361 - H281DRAFT_02293 0.67 -0.4 439,361 - H281DRAFT_02293 0.67 -0.5 439,430 - H281DRAFT_02293 0.73 -0.1
Or see this region's nucleotide sequence