Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01512

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01511 and H281DRAFT_01512 are separated by 216 nucleotidesH281DRAFT_01512 and H281DRAFT_01513 are separated by 61 nucleotides H281DRAFT_01511: H281DRAFT_01511 - transcriptional regulator, GntR family, at 381,498 to 382,202 _01511 H281DRAFT_01512: H281DRAFT_01512 - transcriptional regulator, IclR family, at 382,419 to 383,243 _01512 H281DRAFT_01513: H281DRAFT_01513 - hippurate hydrolase, at 383,305 to 384,495 _01513 Position (kb) 382 383 384Strain fitness (log2 ratio) -1 0 1at 381.422 kb on + strandat 381.688 kb on + strand, within H281DRAFT_01511at 381.688 kb on + strand, within H281DRAFT_01511at 381.688 kb on + strand, within H281DRAFT_01511at 381.689 kb on - strand, within H281DRAFT_01511at 382.146 kb on - strandat 382.319 kb on + strandat 382.319 kb on + strandat 382.566 kb on - strand, within H281DRAFT_01512at 382.795 kb on + strand, within H281DRAFT_01512at 383.133 kb on - strand, within H281DRAFT_01512at 383.381 kb on + strandat 383.434 kb on + strand, within H281DRAFT_01513at 383.434 kb on + strand, within H281DRAFT_01513at 383.598 kb on + strand, within H281DRAFT_01513at 383.625 kb on - strand, within H281DRAFT_01513at 383.902 kb on + strand, within H281DRAFT_01513

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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381,422 + -0.0
381,688 + H281DRAFT_01511 0.27 -1.3
381,688 + H281DRAFT_01511 0.27 -0.2
381,688 + H281DRAFT_01511 0.27 +0.6
381,689 - H281DRAFT_01511 0.27 -0.5
382,146 - -0.5
382,319 + +0.0
382,319 + -0.1
382,566 - H281DRAFT_01512 0.18 +0.6
382,795 + H281DRAFT_01512 0.46 +0.3
383,133 - H281DRAFT_01512 0.87 +0.9
383,381 + +0.0
383,434 + H281DRAFT_01513 0.11 -0.3
383,434 + H281DRAFT_01513 0.11 -0.3
383,598 + H281DRAFT_01513 0.25 +0.4
383,625 - H281DRAFT_01513 0.27 -0.3
383,902 + H281DRAFT_01513 0.50 +0.1

Or see this region's nucleotide sequence