Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01492 and H281DRAFT_01493 are separated by 396 nucleotides H281DRAFT_01493 and H281DRAFT_01494 are separated by 73 nucleotides
H281DRAFT_01492: H281DRAFT_01492 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 362,019 to 362,444
_01492
H281DRAFT_01493: H281DRAFT_01493 - aspartate carbamoyltransferase, at 362,841 to 364,133
_01493
H281DRAFT_01494: H281DRAFT_01494 - S-formylglutathione hydrolase FrmB, at 364,207 to 365,049
_01494
Position (kb) 362
363
364
365 Strain fitness (log2 ratio) -1
0
1 at 361.845 kb on + strand at 361.846 kb on - strand at 361.847 kb on + strand at 361.848 kb on - strand at 361.848 kb on - strand at 361.848 kb on - strand at 361.848 kb on - strand at 362.028 kb on - strand at 362.183 kb on + strand, within H281DRAFT_01492 at 362.183 kb on + strand, within H281DRAFT_01492 at 362.183 kb on + strand, within H281DRAFT_01492 at 362.184 kb on - strand, within H281DRAFT_01492 at 362.184 kb on - strand at 362.184 kb on - strand, within H281DRAFT_01492 at 362.206 kb on + strand, within H281DRAFT_01492 at 362.207 kb on - strand, within H281DRAFT_01492 at 362.355 kb on + strand, within H281DRAFT_01492 at 362.397 kb on + strand, within H281DRAFT_01492 at 362.494 kb on + strand at 362.494 kb on + strand at 362.689 kb on + strand at 362.945 kb on + strand at 362.945 kb on + strand at 363.045 kb on - strand, within H281DRAFT_01493 at 363.254 kb on + strand, within H281DRAFT_01493 at 363.255 kb on - strand, within H281DRAFT_01493 at 364.243 kb on - strand at 364.416 kb on + strand, within H281DRAFT_01494 at 364.746 kb on + strand, within H281DRAFT_01494 at 364.747 kb on - strand, within H281DRAFT_01494 at 364.869 kb on - strand, within H281DRAFT_01494 at 364.908 kb on - strand, within H281DRAFT_01494 at 365.018 kb on - strand at 365.018 kb on - strand at 365.068 kb on + strand at 365.068 kb on + strand at 365.068 kb on + strand at 365.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 361,845 + -0.9 361,846 - +0.3 361,847 + +0.2 361,848 - -1.1 361,848 - +0.0 361,848 - +0.2 361,848 - -0.1 362,028 - -0.3 362,183 + H281DRAFT_01492 0.38 +0.1 362,183 + H281DRAFT_01492 0.38 -0.4 362,183 + H281DRAFT_01492 0.38 +0.7 362,184 - H281DRAFT_01492 0.39 +0.2 362,184 - +0.9 362,184 - H281DRAFT_01492 0.39 -0.4 362,206 + H281DRAFT_01492 0.44 -0.1 362,207 - H281DRAFT_01492 0.44 +0.1 362,355 + H281DRAFT_01492 0.79 -0.2 362,397 + H281DRAFT_01492 0.89 +0.4 362,494 + +0.1 362,494 + +0.2 362,689 + +0.1 362,945 + +0.1 362,945 + +0.1 363,045 - H281DRAFT_01493 0.16 +1.1 363,254 + H281DRAFT_01493 0.32 +0.6 363,255 - H281DRAFT_01493 0.32 +0.3 364,243 - -0.2 364,416 + H281DRAFT_01494 0.25 +1.3 364,746 + H281DRAFT_01494 0.64 +0.1 364,747 - H281DRAFT_01494 0.64 +0.1 364,869 - H281DRAFT_01494 0.79 -0.3 364,908 - H281DRAFT_01494 0.83 -0.3 365,018 - +0.3 365,018 - -0.0 365,068 + +0.5 365,068 + +0.4 365,068 + +0.0 365,069 - +0.0
Or see this region's nucleotide sequence