Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01479 and H281DRAFT_01480 are separated by 221 nucleotides H281DRAFT_01480 and H281DRAFT_01481 are separated by 778 nucleotides
H281DRAFT_01479: H281DRAFT_01479 - Membrane proteins related to metalloendopeptidases, at 347,425 to 348,402
_01479
H281DRAFT_01480: H281DRAFT_01480 - 4-hydroxy-tetrahydrodipicolinate synthase, at 348,624 to 349,523
_01480
H281DRAFT_01481: H281DRAFT_01481 - Uncharacterized conserved protein, at 350,302 to 351,840
_01481
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1 at 347.639 kb on - strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 348.425 kb on + strand at 348.426 kb on - strand at 348.426 kb on - strand at 348.470 kb on + strand at 348.702 kb on + strand at 349.163 kb on - strand, within H281DRAFT_01480 at 349.163 kb on - strand, within H281DRAFT_01480 at 350.075 kb on + strand at 350.075 kb on + strand at 350.210 kb on + strand at 350.253 kb on + strand at 350.254 kb on - strand at 350.297 kb on + strand at 350.367 kb on - strand at 350.452 kb on - strand at 350.453 kb on + strand at 350.454 kb on - strand at 350.454 kb on - strand at 350.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 347,639 - H281DRAFT_01479 0.22 +0.1 347,843 + H281DRAFT_01479 0.43 +0.5 347,843 + H281DRAFT_01479 0.43 +0.4 347,843 + H281DRAFT_01479 0.43 +0.7 347,843 + H281DRAFT_01479 0.43 -0.2 348,425 + -0.2 348,426 - -0.9 348,426 - +0.0 348,470 + +0.2 348,702 + -1.4 349,163 - H281DRAFT_01480 0.60 +0.9 349,163 - H281DRAFT_01480 0.60 +0.8 350,075 + +0.1 350,075 + +1.4 350,210 + +0.1 350,253 + -0.3 350,254 - -1.6 350,297 + +0.0 350,367 - -1.2 350,452 - -0.7 350,453 + +0.4 350,454 - -0.2 350,454 - +0.2 350,454 - -0.1
Or see this region's nucleotide sequence