Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01476 and H281DRAFT_01477 are separated by 45 nucleotides H281DRAFT_01477 and H281DRAFT_01478 are separated by 78 nucleotides H281DRAFT_01478 and H281DRAFT_01479 overlap by 8 nucleotides
H281DRAFT_01476: H281DRAFT_01476 - diguanylate cyclase/phosphodiesterase, at 344,403 to 346,481
_01476
H281DRAFT_01477: H281DRAFT_01477 - protein CcmA, bactofilin family, at 346,527 to 346,943
_01477
H281DRAFT_01478: H281DRAFT_01478 - hypothetical protein, at 347,022 to 347,432
_01478
H281DRAFT_01479: H281DRAFT_01479 - Membrane proteins related to metalloendopeptidases, at 347,425 to 348,402
_01479
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 346.180 kb on - strand, within H281DRAFT_01476 at 346.195 kb on - strand, within H281DRAFT_01476 at 346.327 kb on + strand at 346.639 kb on + strand, within H281DRAFT_01477 at 346.640 kb on - strand, within H281DRAFT_01477 at 346.642 kb on + strand, within H281DRAFT_01477 at 346.642 kb on + strand, within H281DRAFT_01477 at 346.943 kb on + strand at 346.944 kb on - strand at 346.947 kb on + strand at 347.380 kb on + strand, within H281DRAFT_01478 at 347.459 kb on + strand at 347.551 kb on - strand, within H281DRAFT_01479 at 347.610 kb on - strand, within H281DRAFT_01479 at 347.639 kb on - strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 347.843 kb on + strand, within H281DRAFT_01479 at 348.425 kb on + strand at 348.426 kb on - strand at 348.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 346,180 - H281DRAFT_01476 0.85 -0.8 346,195 - H281DRAFT_01476 0.86 +0.0 346,327 + +0.5 346,639 + H281DRAFT_01477 0.27 -0.0 346,640 - H281DRAFT_01477 0.27 -0.5 346,642 + H281DRAFT_01477 0.28 -0.3 346,642 + H281DRAFT_01477 0.28 -0.0 346,943 + -0.0 346,944 - +1.4 346,947 + +0.6 347,380 + H281DRAFT_01478 0.87 +0.7 347,459 + -0.1 347,551 - H281DRAFT_01479 0.13 +0.6 347,610 - H281DRAFT_01479 0.19 -1.8 347,639 - H281DRAFT_01479 0.22 +0.1 347,843 + H281DRAFT_01479 0.43 +0.5 347,843 + H281DRAFT_01479 0.43 +0.4 347,843 + H281DRAFT_01479 0.43 +0.7 347,843 + H281DRAFT_01479 0.43 -0.2 348,425 + -0.2 348,426 - -0.9 348,426 - +0.0
Or see this region's nucleotide sequence