Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01136

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01135 and H281DRAFT_01136 are separated by 79 nucleotidesH281DRAFT_01136 and H281DRAFT_01137 are separated by 47 nucleotidesH281DRAFT_01137 and H281DRAFT_01138 are separated by 5 nucleotides H281DRAFT_01135: H281DRAFT_01135 - Sugar phosphate permease, at 1,280,526 to 1,281,911 _01135 H281DRAFT_01136: H281DRAFT_01136 - 5-(hydroxymethyl)furfural/furfural oxidase, at 1,281,991 to 1,283,739 _01136 H281DRAFT_01137: H281DRAFT_01137 - 2-oxoglutaroyl-CoA hydrolase, at 1,283,787 to 1,284,593 _01137 H281DRAFT_01138: H281DRAFT_01138 - 2-furoate---CoA ligase, at 1,284,599 to 1,286,215 _01138 Position (kb) 1281 1282 1283 1284Strain fitness (log2 ratio) -1 0 1at 1281.445 kb on + strand, within H281DRAFT_01135at 1281.477 kb on - strand, within H281DRAFT_01135at 1281.843 kb on + strandat 1281.844 kb on - strandat 1282.718 kb on + strand, within H281DRAFT_01136at 1283.378 kb on - strand, within H281DRAFT_01136at 1283.502 kb on - strand, within H281DRAFT_01136at 1283.555 kb on + strand, within H281DRAFT_01136at 1283.870 kb on + strand, within H281DRAFT_01137at 1284.181 kb on + strand, within H281DRAFT_01137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
1,281,445 + H281DRAFT_01135 0.66 +0.0
1,281,477 - H281DRAFT_01135 0.69 +0.2
1,281,843 + +0.0
1,281,844 - +0.0
1,282,718 + H281DRAFT_01136 0.42 +0.4
1,283,378 - H281DRAFT_01136 0.79 +0.2
1,283,502 - H281DRAFT_01136 0.86 +0.8
1,283,555 + H281DRAFT_01136 0.89 +0.5
1,283,870 + H281DRAFT_01137 0.10 -1.0
1,284,181 + H281DRAFT_01137 0.49 +0.5

Or see this region's nucleotide sequence