Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00861 and H281DRAFT_00862 are separated by 161 nucleotides H281DRAFT_00862 and H281DRAFT_00863 overlap by 4 nucleotides H281DRAFT_00863 and H281DRAFT_00864 overlap by 4 nucleotides
H281DRAFT_00861: H281DRAFT_00861 - hypothetical protein, at 952,386 to 953,630
_00861
H281DRAFT_00862: H281DRAFT_00862 - DNA end-binding protein Ku, at 953,792 to 954,820
_00862
H281DRAFT_00863: H281DRAFT_00863 - hypothetical protein, at 954,817 to 954,963
_00863
H281DRAFT_00864: H281DRAFT_00864 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 954,960 to 957,980
_00864
Position (kb) 953
954
955 Strain fitness (log2 ratio) -1
0
1
2 at 952.992 kb on + strand, within H281DRAFT_00861 at 953.687 kb on + strand at 953.800 kb on + strand at 953.800 kb on + strand at 953.800 kb on + strand at 953.801 kb on - strand at 953.801 kb on - strand at 953.801 kb on - strand at 953.924 kb on + strand, within H281DRAFT_00862 at 954.005 kb on + strand at 954.005 kb on + strand, within H281DRAFT_00862 at 954.005 kb on + strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.006 kb on - strand, within H281DRAFT_00862 at 954.068 kb on - strand, within H281DRAFT_00862 at 954.159 kb on - strand, within H281DRAFT_00862 at 954.425 kb on + strand, within H281DRAFT_00862 at 954.745 kb on + strand at 954.982 kb on - strand at 954.982 kb on - strand at 954.982 kb on - strand at 955.092 kb on + strand at 955.509 kb on + strand, within H281DRAFT_00864 at 955.509 kb on + strand, within H281DRAFT_00864 at 955.510 kb on - strand, within H281DRAFT_00864 at 955.510 kb on - strand, within H281DRAFT_00864 at 955.745 kb on - strand, within H281DRAFT_00864
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 952,992 + H281DRAFT_00861 0.49 +0.3 953,687 + +0.0 953,800 + -1.5 953,800 + +0.4 953,800 + -0.1 953,801 - +0.5 953,801 - -0.1 953,801 - +0.7 953,924 + H281DRAFT_00862 0.13 -0.2 954,005 + +0.4 954,005 + H281DRAFT_00862 0.21 +0.2 954,005 + H281DRAFT_00862 0.21 +0.3 954,006 - H281DRAFT_00862 0.21 +0.5 954,006 - H281DRAFT_00862 0.21 +0.7 954,006 - H281DRAFT_00862 0.21 +0.2 954,068 - H281DRAFT_00862 0.27 -0.2 954,159 - H281DRAFT_00862 0.36 +0.4 954,425 + H281DRAFT_00862 0.62 +0.1 954,745 + -0.5 954,982 - +0.8 954,982 - +0.3 954,982 - +0.2 955,092 + -0.8 955,509 + H281DRAFT_00864 0.18 +1.9 955,509 + H281DRAFT_00864 0.18 -0.3 955,510 - H281DRAFT_00864 0.18 -0.2 955,510 - H281DRAFT_00864 0.18 +0.3 955,745 - H281DRAFT_00864 0.26 -0.6
Or see this region's nucleotide sequence