Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00721

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00719 and H281DRAFT_00720 are separated by 37 nucleotidesH281DRAFT_00720 and H281DRAFT_00721 are separated by 2 nucleotidesH281DRAFT_00721 and H281DRAFT_00722 are separated by 36 nucleotides H281DRAFT_00719: H281DRAFT_00719 - polysaccharide export outer membrane protein, at 809,453 to 810,646 _00719 H281DRAFT_00720: H281DRAFT_00720 - Glycosyltransferase, GT2 family, at 810,684 to 811,637 _00720 H281DRAFT_00721: H281DRAFT_00721 - putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase, at 811,640 to 813,049 _00721 H281DRAFT_00722: H281DRAFT_00722 - transcriptional regulator, Crp/Fnr family, at 813,086 to 813,820 _00722 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -1 0 1at 811.419 kb on - strand, within H281DRAFT_00720at 811.726 kb on - strandat 812.672 kb on + strand, within H281DRAFT_00721at 813.683 kb on - strand, within H281DRAFT_00722at 813.890 kb on - strandat 813.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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811,419 - H281DRAFT_00720 0.77 +0.3
811,726 - +0.0
812,672 + H281DRAFT_00721 0.73 +0.4
813,683 - H281DRAFT_00722 0.81 +0.6
813,890 - +0.8
813,891 + +0.5

Or see this region's nucleotide sequence