Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18275

Experiment: L-Cysteine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18265 and BWI76_RS18270 are separated by 46 nucleotidesBWI76_RS18270 and BWI76_RS18275 are separated by 371 nucleotidesBWI76_RS18275 and BWI76_RS18280 are separated by 47 nucleotides BWI76_RS18265: BWI76_RS18265 - MFS transporter, at 3,795,745 to 3,797,307 _RS18265 BWI76_RS18270: BWI76_RS18270 - hypothetical protein, at 3,797,354 to 3,797,605 _RS18270 BWI76_RS18275: BWI76_RS18275 - MFS transporter, at 3,797,977 to 3,799,401 _RS18275 BWI76_RS18280: BWI76_RS18280 - hypothetical protein, at 3,799,449 to 3,800,087 _RS18280 Position (kb) 3797 3798 3799 3800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3797.154 kb on + strandat 3797.431 kb on + strand, within BWI76_RS18270at 3797.761 kb on + strandat 3797.922 kb on + strandat 3797.922 kb on + strandat 3797.925 kb on - strandat 3797.925 kb on - strandat 3797.930 kb on - strandat 3797.949 kb on - strandat 3798.093 kb on - strandat 3798.299 kb on - strand, within BWI76_RS18275at 3798.398 kb on + strand, within BWI76_RS18275at 3798.403 kb on + strandat 3798.411 kb on - strand, within BWI76_RS18275at 3798.562 kb on + strand, within BWI76_RS18275at 3798.570 kb on - strand, within BWI76_RS18275at 3798.701 kb on + strand, within BWI76_RS18275at 3798.787 kb on - strand, within BWI76_RS18275at 3799.023 kb on - strand, within BWI76_RS18275at 3799.181 kb on - strand, within BWI76_RS18275at 3799.184 kb on + strand, within BWI76_RS18275at 3799.184 kb on + strand, within BWI76_RS18275at 3799.229 kb on + strand, within BWI76_RS18275at 3799.259 kb on + strandat 3799.351 kb on + strandat 3799.369 kb on + strandat 3799.411 kb on - strandat 3799.466 kb on - strandat 3799.548 kb on - strand, within BWI76_RS18280at 3799.635 kb on + strand, within BWI76_RS18280at 3799.637 kb on + strand, within BWI76_RS18280at 3799.730 kb on + strand, within BWI76_RS18280at 3799.745 kb on - strand, within BWI76_RS18280at 3799.771 kb on + strand, within BWI76_RS18280at 3799.941 kb on + strand, within BWI76_RS18280at 3799.949 kb on - strand, within BWI76_RS18280at 3799.961 kb on - strand, within BWI76_RS18280at 3800.096 kb on + strandat 3800.098 kb on + strandat 3800.098 kb on + strandat 3800.098 kb on + strandat 3800.098 kb on + strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.106 kb on - strandat 3800.144 kb on - strandat 3800.234 kb on - strandat 3800.254 kb on - strandat 3800.257 kb on - strandat 3800.257 kb on - strandat 3800.266 kb on + strandat 3800.266 kb on + strandat 3800.266 kb on + strandat 3800.267 kb on - strandat 3800.271 kb on + strandat 3800.272 kb on - strandat 3800.274 kb on - strandat 3800.275 kb on + strandat 3800.275 kb on + strandat 3800.287 kb on - strandat 3800.306 kb on - strandat 3800.306 kb on - strandat 3800.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
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3,797,154 + -0.1
3,797,431 + BWI76_RS18270 0.31 +0.5
3,797,761 + +0.1
3,797,922 + -0.0
3,797,922 + +1.7
3,797,925 - +0.3
3,797,925 - +0.2
3,797,930 - -2.5
3,797,949 - -0.3
3,798,093 - +0.5
3,798,299 - BWI76_RS18275 0.23 -0.7
3,798,398 + BWI76_RS18275 0.30 -0.3
3,798,403 + +1.9
3,798,411 - BWI76_RS18275 0.30 +2.4
3,798,562 + BWI76_RS18275 0.41 +0.5
3,798,570 - BWI76_RS18275 0.42 +0.6
3,798,701 + BWI76_RS18275 0.51 +1.8
3,798,787 - BWI76_RS18275 0.57 +0.4
3,799,023 - BWI76_RS18275 0.73 +0.4
3,799,181 - BWI76_RS18275 0.84 +1.4
3,799,184 + BWI76_RS18275 0.85 -0.5
3,799,184 + BWI76_RS18275 0.85 +0.3
3,799,229 + BWI76_RS18275 0.88 +0.8
3,799,259 + +0.1
3,799,351 + -0.8
3,799,369 + +0.4
3,799,411 - +0.0
3,799,466 - +0.1
3,799,548 - BWI76_RS18280 0.15 +0.6
3,799,635 + BWI76_RS18280 0.29 +0.1
3,799,637 + BWI76_RS18280 0.29 -0.0
3,799,730 + BWI76_RS18280 0.44 -0.8
3,799,745 - BWI76_RS18280 0.46 +0.7
3,799,771 + BWI76_RS18280 0.50 -1.1
3,799,941 + BWI76_RS18280 0.77 +0.4
3,799,949 - BWI76_RS18280 0.78 +0.1
3,799,961 - BWI76_RS18280 0.80 +0.8
3,800,096 + +2.6
3,800,098 + -0.0
3,800,098 + -0.1
3,800,098 + +1.9
3,800,098 + +2.2
3,800,106 - +0.3
3,800,106 - -0.3
3,800,106 - +1.0
3,800,106 - -1.8
3,800,106 - +1.0
3,800,106 - -0.7
3,800,106 - -2.8
3,800,144 - -0.8
3,800,234 - +1.2
3,800,254 - +0.6
3,800,257 - -0.1
3,800,257 - +0.1
3,800,266 + -0.4
3,800,266 + +0.1
3,800,266 + +0.9
3,800,267 - -0.2
3,800,271 + +0.2
3,800,272 - -3.6
3,800,274 - +0.4
3,800,275 + -0.1
3,800,275 + -1.1
3,800,287 - +0.6
3,800,306 - +0.6
3,800,306 - +0.7
3,800,312 + -1.7

Or see this region's nucleotide sequence