Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02260

Experiment: L-Cysteine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS02250 and BWI76_RS02255 are separated by 121 nucleotidesBWI76_RS02255 and BWI76_RS02260 overlap by 1 nucleotidesBWI76_RS02260 and BWI76_RS02265 are separated by 149 nucleotides BWI76_RS02250: BWI76_RS02250 - proline/betaine transporter, at 462,856 to 464,358 _RS02250 BWI76_RS02255: BWI76_RS02255 - chaperone-modulator protein CbpM, at 464,480 to 464,785 _RS02255 BWI76_RS02260: BWI76_RS02260 - DNA-binding protein, at 464,785 to 465,705 _RS02260 BWI76_RS02265: BWI76_RS02265 - putative transmembrane protein, at 465,855 to 466,535 _RS02265 Position (kb) 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1at 463.840 kb on - strand, within BWI76_RS02250at 463.999 kb on + strand, within BWI76_RS02250at 464.047 kb on - strand, within BWI76_RS02250at 464.069 kb on + strand, within BWI76_RS02250at 464.069 kb on + strand, within BWI76_RS02250at 464.096 kb on + strand, within BWI76_RS02250at 464.151 kb on + strand, within BWI76_RS02250at 464.326 kb on - strandat 464.447 kb on - strandat 464.614 kb on + strand, within BWI76_RS02255at 464.619 kb on - strand, within BWI76_RS02255at 464.632 kb on - strand, within BWI76_RS02255at 464.683 kb on + strand, within BWI76_RS02255at 464.801 kb on + strandat 464.831 kb on + strandat 464.934 kb on + strand, within BWI76_RS02260at 464.934 kb on + strand, within BWI76_RS02260at 465.097 kb on - strand, within BWI76_RS02260at 465.279 kb on + strand, within BWI76_RS02260at 465.435 kb on + strand, within BWI76_RS02260at 465.437 kb on + strand, within BWI76_RS02260at 465.445 kb on - strand, within BWI76_RS02260at 465.536 kb on - strand, within BWI76_RS02260at 465.608 kb on - strand, within BWI76_RS02260at 465.647 kb on - strandat 465.647 kb on - strandat 465.647 kb on - strandat 465.801 kb on - strandat 465.853 kb on + strandat 465.907 kb on - strandat 465.907 kb on - strandat 465.925 kb on - strand, within BWI76_RS02265at 466.201 kb on - strand, within BWI76_RS02265at 466.315 kb on - strand, within BWI76_RS02265at 466.421 kb on + strand, within BWI76_RS02265at 466.429 kb on - strand, within BWI76_RS02265at 466.434 kb on - strand, within BWI76_RS02265at 466.589 kb on + strandat 466.589 kb on + strandat 466.589 kb on + strandat 466.591 kb on - strandat 466.597 kb on - strandat 466.606 kb on - strandat 466.614 kb on + strandat 466.695 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
remove
463,840 - BWI76_RS02250 0.65 +0.2
463,999 + BWI76_RS02250 0.76 +0.0
464,047 - BWI76_RS02250 0.79 -0.0
464,069 + BWI76_RS02250 0.81 +1.1
464,069 + BWI76_RS02250 0.81 +0.1
464,096 + BWI76_RS02250 0.83 +0.6
464,151 + BWI76_RS02250 0.86 +0.7
464,326 - -0.5
464,447 - -1.3
464,614 + BWI76_RS02255 0.44 -1.3
464,619 - BWI76_RS02255 0.45 -2.4
464,632 - BWI76_RS02255 0.50 +0.2
464,683 + BWI76_RS02255 0.66 -1.8
464,801 + -0.2
464,831 + -0.4
464,934 + BWI76_RS02260 0.16 -1.1
464,934 + BWI76_RS02260 0.16 +0.5
465,097 - BWI76_RS02260 0.34 -0.3
465,279 + BWI76_RS02260 0.54 +1.5
465,435 + BWI76_RS02260 0.71 +0.4
465,437 + BWI76_RS02260 0.71 +0.9
465,445 - BWI76_RS02260 0.72 -0.3
465,536 - BWI76_RS02260 0.82 +1.2
465,608 - BWI76_RS02260 0.89 +0.1
465,647 - +0.2
465,647 - +0.2
465,647 - -1.9
465,801 - +0.2
465,853 + -0.3
465,907 - -0.2
465,907 - -0.4
465,925 - BWI76_RS02265 0.10 -0.7
466,201 - BWI76_RS02265 0.51 +0.4
466,315 - BWI76_RS02265 0.68 +0.6
466,421 + BWI76_RS02265 0.83 -1.2
466,429 - BWI76_RS02265 0.84 -0.2
466,434 - BWI76_RS02265 0.85 -0.8
466,589 + -0.1
466,589 + -2.8
466,589 + +0.3
466,591 - -0.2
466,597 - -0.6
466,606 - -1.4
466,614 + +0.7
466,695 + +0.9

Or see this region's nucleotide sequence