Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4076

Experiment: m.b. Fusidic 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4075 and Dshi_4076 are separated by 124 nucleotidesDshi_4076 and Dshi_4077 are separated by 16 nucleotidesDshi_4077 and Dshi_4078 are separated by 35 nucleotides Dshi_4075: Dshi_4075 - hypothetical protein (RefSeq), at 8,880 to 9,245 _4075 Dshi_4076: Dshi_4076 - capsule polysaccharide export protein (RefSeq), at 9,370 to 10,845 _4076 Dshi_4077: Dshi_4077 - ABC transporter related (RefSeq), at 10,862 to 11,521 _4077 Dshi_4078: Dshi_4078 - hypothetical protein (RefSeq), at 11,557 to 11,931 _4078 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.401 kb on + strandat 8.409 kb on - strandat 8.410 kb on - strandat 8.420 kb on - strandat 8.466 kb on + strandat 8.469 kb on + strandat 8.471 kb on + strandat 8.476 kb on + strandat 8.479 kb on - strandat 8.484 kb on - strandat 8.484 kb on - strandat 8.484 kb on - strandat 8.488 kb on + strandat 8.512 kb on + strandat 8.520 kb on - strandat 8.520 kb on - strandat 8.520 kb on - strandat 8.520 kb on - strandat 8.526 kb on - strandat 8.535 kb on - strandat 8.542 kb on - strandat 8.549 kb on + strandat 8.551 kb on + strandat 8.553 kb on - strandat 8.557 kb on - strandat 8.567 kb on - strandat 8.585 kb on + strandat 8.616 kb on + strandat 8.619 kb on + strandat 8.621 kb on + strandat 8.621 kb on + strandat 8.623 kb on - strandat 8.626 kb on + strandat 8.627 kb on - strandat 8.628 kb on - strandat 8.628 kb on - strandat 8.629 kb on - strandat 8.631 kb on + strandat 8.642 kb on + strandat 8.643 kb on - strandat 8.652 kb on - strandat 8.655 kb on + strandat 8.655 kb on + strandat 8.657 kb on + strandat 8.667 kb on - strandat 8.673 kb on + strandat 8.680 kb on - strandat 8.727 kb on + strandat 8.727 kb on + strandat 8.734 kb on + strandat 8.734 kb on + strandat 8.735 kb on + strandat 8.742 kb on + strandat 8.742 kb on + strandat 8.744 kb on - strandat 8.750 kb on - strandat 8.750 kb on - strandat 8.750 kb on - strandat 8.750 kb on - strandat 8.750 kb on - strandat 8.751 kb on + strandat 8.752 kb on - strandat 8.752 kb on - strandat 8.759 kb on - strandat 8.794 kb on - strandat 8.802 kb on - strandat 8.802 kb on - strandat 8.808 kb on + strandat 8.808 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.813 kb on + strandat 8.816 kb on - strandat 8.818 kb on + strandat 8.818 kb on + strandat 8.821 kb on - strandat 8.821 kb on - strandat 8.821 kb on - strandat 8.821 kb on - strandat 8.821 kb on - strandat 8.823 kb on + strandat 8.830 kb on - strandat 8.835 kb on + strandat 8.835 kb on + strandat 8.867 kb on - strandat 9.226 kb on + strandat 9.239 kb on + strandat 9.279 kb on + strandat 9.279 kb on + strandat 9.339 kb on - strandat 9.386 kb on - strandat 9.396 kb on + strandat 9.420 kb on + strandat 9.481 kb on + strandat 9.490 kb on + strandat 9.518 kb on + strand, within Dshi_4076at 9.524 kb on + strand, within Dshi_4076at 9.537 kb on + strand, within Dshi_4076at 9.537 kb on + strand, within Dshi_4076at 9.558 kb on - strand, within Dshi_4076at 9.695 kb on - strand, within Dshi_4076at 9.814 kb on + strand, within Dshi_4076at 10.014 kb on + strand, within Dshi_4076at 10.295 kb on - strand, within Dshi_4076at 10.456 kb on - strand, within Dshi_4076at 10.581 kb on - strand, within Dshi_4076at 11.022 kb on + strand, within Dshi_4077at 11.408 kb on - strand, within Dshi_4077at 11.520 kb on + strandat 11.523 kb on - strandat 11.621 kb on - strand, within Dshi_4078at 11.627 kb on + strand, within Dshi_4078at 11.637 kb on + strand, within Dshi_4078at 11.664 kb on + strand, within Dshi_4078at 11.665 kb on + strand, within Dshi_4078at 11.709 kb on + strand, within Dshi_4078at 11.727 kb on - strand, within Dshi_4078at 11.757 kb on - strand, within Dshi_4078at 11.762 kb on - strand, within Dshi_4078at 11.794 kb on - strand, within Dshi_4078

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml
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8,401 + +0.2
8,409 - -0.1
8,410 - -0.8
8,420 - +0.4
8,466 + +1.1
8,469 + +0.2
8,471 + +0.8
8,476 + +1.3
8,479 - -1.1
8,484 - -0.2
8,484 - -0.3
8,484 - +0.2
8,488 + +0.5
8,512 + -0.1
8,520 - -0.2
8,520 - -0.3
8,520 - -2.0
8,520 - -0.1
8,526 - -0.6
8,535 - +0.5
8,542 - +0.4
8,549 + -0.8
8,551 + +0.5
8,553 - +0.3
8,557 - +0.4
8,567 - -0.3
8,585 + -0.5
8,616 + +0.2
8,619 + +0.0
8,621 + +0.5
8,621 + +0.4
8,623 - -1.0
8,626 + -0.1
8,627 - -0.3
8,628 - +1.8
8,628 - -1.3
8,629 - -0.9
8,631 + +0.2
8,642 + +0.4
8,643 - +0.4
8,652 - -0.4
8,655 + +0.4
8,655 + +0.4
8,657 + -0.3
8,667 - -0.2
8,673 + +0.1
8,680 - -0.0
8,727 + +0.5
8,727 + +0.4
8,734 + +0.7
8,734 + +0.5
8,735 + -0.1
8,742 + -0.5
8,742 + -0.1
8,744 - +0.7
8,750 - +0.2
8,750 - +0.9
8,750 - +0.4
8,750 - +1.6
8,750 - -1.4
8,751 + +1.0
8,752 - +0.7
8,752 - +1.2
8,759 - +0.8
8,794 - +0.2
8,802 - +0.6
8,802 - -0.7
8,808 + +0.0
8,808 + -2.6
8,813 + +0.8
8,813 + -0.4
8,813 + +0.5
8,813 + -1.1
8,813 + -0.4
8,813 + +0.9
8,813 + -1.2
8,813 + +0.5
8,813 + +1.0
8,813 + +0.5
8,813 + -0.3
8,813 + +0.1
8,816 - +0.2
8,818 + -0.6
8,818 + +0.2
8,821 - +0.8
8,821 - +0.1
8,821 - +0.1
8,821 - +0.5
8,821 - +0.7
8,823 + +0.3
8,830 - -0.2
8,835 + -1.1
8,835 + -1.0
8,867 - +0.3
9,226 + -0.4
9,239 + +0.7
9,279 + -0.9
9,279 + -0.6
9,339 - +0.7
9,386 - +0.2
9,396 + -0.3
9,420 + -1.1
9,481 + -1.4
9,490 + -0.8
9,518 + Dshi_4076 0.10 -0.3
9,524 + Dshi_4076 0.10 -2.5
9,537 + Dshi_4076 0.11 +1.2
9,537 + Dshi_4076 0.11 -0.8
9,558 - Dshi_4076 0.13 -1.0
9,695 - Dshi_4076 0.22 -0.9
9,814 + Dshi_4076 0.30 -1.0
10,014 + Dshi_4076 0.44 -1.2
10,295 - Dshi_4076 0.63 -0.5
10,456 - Dshi_4076 0.74 -0.4
10,581 - Dshi_4076 0.82 -0.0
11,022 + Dshi_4077 0.24 -0.1
11,408 - Dshi_4077 0.83 -0.7
11,520 + -0.3
11,523 - -0.6
11,621 - Dshi_4078 0.17 -0.8
11,627 + Dshi_4078 0.19 +0.0
11,637 + Dshi_4078 0.21 +0.0
11,664 + Dshi_4078 0.29 -0.1
11,665 + Dshi_4078 0.29 +1.2
11,709 + Dshi_4078 0.41 +0.8
11,727 - Dshi_4078 0.45 +1.4
11,757 - Dshi_4078 0.53 -0.9
11,762 - Dshi_4078 0.55 +0.6
11,794 - Dshi_4078 0.63 -0.3

Or see this region's nucleotide sequence