Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4075 and Dshi_4076 are separated by 124 nucleotides Dshi_4076 and Dshi_4077 are separated by 16 nucleotides Dshi_4077 and Dshi_4078 are separated by 35 nucleotides
Dshi_4075: Dshi_4075 - hypothetical protein (RefSeq), at 8,880 to 9,245
_4075
Dshi_4076: Dshi_4076 - capsule polysaccharide export protein (RefSeq), at 9,370 to 10,845
_4076
Dshi_4077: Dshi_4077 - ABC transporter related (RefSeq), at 10,862 to 11,521
_4077
Dshi_4078: Dshi_4078 - hypothetical protein (RefSeq), at 11,557 to 11,931
_4078
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.401 kb on + strand at 8.409 kb on - strand at 8.410 kb on - strand at 8.420 kb on - strand at 8.466 kb on + strand at 8.469 kb on + strand at 8.471 kb on + strand at 8.476 kb on + strand at 8.479 kb on - strand at 8.484 kb on - strand at 8.484 kb on - strand at 8.484 kb on - strand at 8.488 kb on + strand at 8.512 kb on + strand at 8.520 kb on - strand at 8.520 kb on - strand at 8.520 kb on - strand at 8.520 kb on - strand at 8.526 kb on - strand at 8.535 kb on - strand at 8.542 kb on - strand at 8.549 kb on + strand at 8.551 kb on + strand at 8.553 kb on - strand at 8.557 kb on - strand at 8.567 kb on - strand at 8.585 kb on + strand at 8.616 kb on + strand at 8.619 kb on + strand at 8.621 kb on + strand at 8.621 kb on + strand at 8.623 kb on - strand at 8.626 kb on + strand at 8.627 kb on - strand at 8.628 kb on - strand at 8.628 kb on - strand at 8.629 kb on - strand at 8.631 kb on + strand at 8.642 kb on + strand at 8.643 kb on - strand at 8.652 kb on - strand at 8.655 kb on + strand at 8.655 kb on + strand at 8.657 kb on + strand at 8.667 kb on - strand at 8.673 kb on + strand at 8.680 kb on - strand at 8.727 kb on + strand at 8.727 kb on + strand at 8.734 kb on + strand at 8.734 kb on + strand at 8.735 kb on + strand at 8.742 kb on + strand at 8.742 kb on + strand at 8.744 kb on - strand at 8.750 kb on - strand at 8.750 kb on - strand at 8.750 kb on - strand at 8.750 kb on - strand at 8.750 kb on - strand at 8.751 kb on + strand at 8.752 kb on - strand at 8.752 kb on - strand at 8.759 kb on - strand at 8.794 kb on - strand at 8.802 kb on - strand at 8.802 kb on - strand at 8.808 kb on + strand at 8.808 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.813 kb on + strand at 8.816 kb on - strand at 8.818 kb on + strand at 8.818 kb on + strand at 8.821 kb on - strand at 8.821 kb on - strand at 8.821 kb on - strand at 8.821 kb on - strand at 8.821 kb on - strand at 8.823 kb on + strand at 8.830 kb on - strand at 8.835 kb on + strand at 8.835 kb on + strand at 8.867 kb on - strand at 9.226 kb on + strand at 9.239 kb on + strand at 9.279 kb on + strand at 9.279 kb on + strand at 9.339 kb on - strand at 9.386 kb on - strand at 9.396 kb on + strand at 9.420 kb on + strand at 9.481 kb on + strand at 9.490 kb on + strand at 9.518 kb on + strand, within Dshi_4076 at 9.524 kb on + strand, within Dshi_4076 at 9.537 kb on + strand, within Dshi_4076 at 9.537 kb on + strand, within Dshi_4076 at 9.558 kb on - strand, within Dshi_4076 at 9.695 kb on - strand, within Dshi_4076 at 9.814 kb on + strand, within Dshi_4076 at 10.014 kb on + strand, within Dshi_4076 at 10.295 kb on - strand, within Dshi_4076 at 10.456 kb on - strand, within Dshi_4076 at 10.581 kb on - strand, within Dshi_4076 at 11.022 kb on + strand, within Dshi_4077 at 11.408 kb on - strand, within Dshi_4077 at 11.520 kb on + strand at 11.523 kb on - strand at 11.621 kb on - strand, within Dshi_4078 at 11.627 kb on + strand, within Dshi_4078 at 11.637 kb on + strand, within Dshi_4078 at 11.664 kb on + strand, within Dshi_4078 at 11.665 kb on + strand, within Dshi_4078 at 11.709 kb on + strand, within Dshi_4078 at 11.727 kb on - strand, within Dshi_4078 at 11.757 kb on - strand, within Dshi_4078 at 11.762 kb on - strand, within Dshi_4078 at 11.794 kb on - strand, within Dshi_4078
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 8,401 + +0.2 8,409 - -0.1 8,410 - -0.8 8,420 - +0.4 8,466 + +1.1 8,469 + +0.2 8,471 + +0.8 8,476 + +1.3 8,479 - -1.1 8,484 - -0.2 8,484 - -0.3 8,484 - +0.2 8,488 + +0.5 8,512 + -0.1 8,520 - -0.2 8,520 - -0.3 8,520 - -2.0 8,520 - -0.1 8,526 - -0.6 8,535 - +0.5 8,542 - +0.4 8,549 + -0.8 8,551 + +0.5 8,553 - +0.3 8,557 - +0.4 8,567 - -0.3 8,585 + -0.5 8,616 + +0.2 8,619 + +0.0 8,621 + +0.5 8,621 + +0.4 8,623 - -1.0 8,626 + -0.1 8,627 - -0.3 8,628 - +1.8 8,628 - -1.3 8,629 - -0.9 8,631 + +0.2 8,642 + +0.4 8,643 - +0.4 8,652 - -0.4 8,655 + +0.4 8,655 + +0.4 8,657 + -0.3 8,667 - -0.2 8,673 + +0.1 8,680 - -0.0 8,727 + +0.5 8,727 + +0.4 8,734 + +0.7 8,734 + +0.5 8,735 + -0.1 8,742 + -0.5 8,742 + -0.1 8,744 - +0.7 8,750 - +0.2 8,750 - +0.9 8,750 - +0.4 8,750 - +1.6 8,750 - -1.4 8,751 + +1.0 8,752 - +0.7 8,752 - +1.2 8,759 - +0.8 8,794 - +0.2 8,802 - +0.6 8,802 - -0.7 8,808 + +0.0 8,808 + -2.6 8,813 + +0.8 8,813 + -0.4 8,813 + +0.5 8,813 + -1.1 8,813 + -0.4 8,813 + +0.9 8,813 + -1.2 8,813 + +0.5 8,813 + +1.0 8,813 + +0.5 8,813 + -0.3 8,813 + +0.1 8,816 - +0.2 8,818 + -0.6 8,818 + +0.2 8,821 - +0.8 8,821 - +0.1 8,821 - +0.1 8,821 - +0.5 8,821 - +0.7 8,823 + +0.3 8,830 - -0.2 8,835 + -1.1 8,835 + -1.0 8,867 - +0.3 9,226 + -0.4 9,239 + +0.7 9,279 + -0.9 9,279 + -0.6 9,339 - +0.7 9,386 - +0.2 9,396 + -0.3 9,420 + -1.1 9,481 + -1.4 9,490 + -0.8 9,518 + Dshi_4076 0.10 -0.3 9,524 + Dshi_4076 0.10 -2.5 9,537 + Dshi_4076 0.11 +1.2 9,537 + Dshi_4076 0.11 -0.8 9,558 - Dshi_4076 0.13 -1.0 9,695 - Dshi_4076 0.22 -0.9 9,814 + Dshi_4076 0.30 -1.0 10,014 + Dshi_4076 0.44 -1.2 10,295 - Dshi_4076 0.63 -0.5 10,456 - Dshi_4076 0.74 -0.4 10,581 - Dshi_4076 0.82 -0.0 11,022 + Dshi_4077 0.24 -0.1 11,408 - Dshi_4077 0.83 -0.7 11,520 + -0.3 11,523 - -0.6 11,621 - Dshi_4078 0.17 -0.8 11,627 + Dshi_4078 0.19 +0.0 11,637 + Dshi_4078 0.21 +0.0 11,664 + Dshi_4078 0.29 -0.1 11,665 + Dshi_4078 0.29 +1.2 11,709 + Dshi_4078 0.41 +0.8 11,727 - Dshi_4078 0.45 +1.4 11,757 - Dshi_4078 0.53 -0.9 11,762 - Dshi_4078 0.55 +0.6 11,794 - Dshi_4078 0.63 -0.3
Or see this region's nucleotide sequence