Experiment: m.b. Fusidic 0.0006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1642 and Dshi_1643 are separated by 144 nucleotides Dshi_1643 and Dshi_1644 are separated by 174 nucleotides
Dshi_1642: Dshi_1642 - alanyl-tRNA synthetase (RefSeq), at 1,701,885 to 1,704,548
_1642
Dshi_1643: Dshi_1643 - recA protein (RefSeq), at 1,704,693 to 1,705,760
_1643
Dshi_1644: Dshi_1644 - integral membrane sensor hybrid histidine kinase (RefSeq), at 1,705,935 to 1,708,274
_1644
Position (kb)
1704
1705
1706 Strain fitness (log2 ratio)
-2
-1
0
1 at 1704.602 kb on + strand at 1704.602 kb on + strand at 1704.610 kb on - strand at 1704.610 kb on - strand at 1704.789 kb on - strand at 1704.885 kb on - strand, within Dshi_1643 at 1704.988 kb on + strand, within Dshi_1643 at 1705.105 kb on - strand, within Dshi_1643 at 1705.316 kb on + strand, within Dshi_1643 at 1705.504 kb on - strand, within Dshi_1643 at 1705.520 kb on + strand, within Dshi_1643 at 1705.550 kb on + strand, within Dshi_1643 at 1705.609 kb on + strand, within Dshi_1643 at 1705.763 kb on - strand at 1705.809 kb on + strand at 1705.856 kb on + strand at 1705.857 kb on + strand at 1705.890 kb on + strand at 1705.928 kb on + strand at 1705.946 kb on - strand at 1705.951 kb on + strand at 1705.988 kb on + strand at 1705.993 kb on + strand at 1705.996 kb on - strand at 1706.001 kb on - strand at 1706.083 kb on - strand at 1706.083 kb on - strand at 1706.085 kb on + strand at 1706.110 kb on + strand at 1706.118 kb on + strand at 1706.118 kb on - strand at 1706.118 kb on - strand at 1706.120 kb on + strand at 1706.140 kb on - strand at 1706.158 kb on - strand at 1706.158 kb on - strand at 1706.217 kb on + strand, within Dshi_1644 at 1706.217 kb on + strand, within Dshi_1644 at 1706.225 kb on - strand, within Dshi_1644 at 1706.225 kb on - strand, within Dshi_1644 at 1706.225 kb on - strand, within Dshi_1644 at 1706.235 kb on - strand, within Dshi_1644 at 1706.252 kb on + strand, within Dshi_1644 at 1706.262 kb on + strand, within Dshi_1644 at 1706.381 kb on + strand, within Dshi_1644 at 1706.389 kb on - strand, within Dshi_1644 at 1706.496 kb on + strand, within Dshi_1644 at 1706.509 kb on - strand, within Dshi_1644 at 1706.509 kb on - strand, within Dshi_1644 at 1706.514 kb on + strand, within Dshi_1644 at 1706.515 kb on - strand, within Dshi_1644 at 1706.527 kb on - strand, within Dshi_1644 at 1706.586 kb on + strand, within Dshi_1644 at 1706.586 kb on + strand, within Dshi_1644 at 1706.594 kb on - strand, within Dshi_1644 at 1706.594 kb on - strand, within Dshi_1644 at 1706.658 kb on + strand, within Dshi_1644 at 1706.658 kb on + strand, within Dshi_1644 at 1706.661 kb on - strand, within Dshi_1644 at 1706.666 kb on - strand, within Dshi_1644
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0006 mg/ml remove 1,704,602 + +0.7 1,704,602 + +0.5 1,704,610 - -0.1 1,704,610 - -0.4 1,704,789 - -1.3 1,704,885 - Dshi_1643 0.18 -0.5 1,704,988 + Dshi_1643 0.28 -1.8 1,705,105 - Dshi_1643 0.39 +0.0 1,705,316 + Dshi_1643 0.58 -0.1 1,705,504 - Dshi_1643 0.76 -1.3 1,705,520 + Dshi_1643 0.77 -2.0 1,705,550 + Dshi_1643 0.80 -1.7 1,705,609 + Dshi_1643 0.86 +0.4 1,705,763 - -0.1 1,705,809 + +0.2 1,705,856 + +0.3 1,705,857 + -0.4 1,705,890 + -0.1 1,705,928 + +0.1 1,705,946 - -0.3 1,705,951 + +0.3 1,705,988 + +1.1 1,705,993 + -0.7 1,705,996 - +1.5 1,706,001 - -0.3 1,706,083 - +1.0 1,706,083 - -0.4 1,706,085 + +0.3 1,706,110 + +0.2 1,706,118 + -0.7 1,706,118 - +0.3 1,706,118 - +0.1 1,706,120 + +0.6 1,706,140 - +1.1 1,706,158 - +0.0 1,706,158 - +0.0 1,706,217 + Dshi_1644 0.12 -0.2 1,706,217 + Dshi_1644 0.12 +1.3 1,706,225 - Dshi_1644 0.12 -0.7 1,706,225 - Dshi_1644 0.12 +0.1 1,706,225 - Dshi_1644 0.12 +0.1 1,706,235 - Dshi_1644 0.13 -0.2 1,706,252 + Dshi_1644 0.14 +0.7 1,706,262 + Dshi_1644 0.14 -1.3 1,706,381 + Dshi_1644 0.19 -0.6 1,706,389 - Dshi_1644 0.19 +1.4 1,706,496 + Dshi_1644 0.24 +0.4 1,706,509 - Dshi_1644 0.25 +0.3 1,706,509 - Dshi_1644 0.25 -2.7 1,706,514 + Dshi_1644 0.25 +0.5 1,706,515 - Dshi_1644 0.25 +0.3 1,706,527 - Dshi_1644 0.25 +0.8 1,706,586 + Dshi_1644 0.28 +0.4 1,706,586 + Dshi_1644 0.28 -0.5 1,706,594 - Dshi_1644 0.28 +0.2 1,706,594 - Dshi_1644 0.28 -0.3 1,706,658 + Dshi_1644 0.31 +0.4 1,706,658 + Dshi_1644 0.31 +0.3 1,706,661 - Dshi_1644 0.31 +0.1 1,706,666 - Dshi_1644 0.31 -1.3
Or see this region's nucleotide sequence